Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51800 864 / 0 Trihelix Protein kinase superfamily protein (.1) AT2G33550 49 / 2e-05 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 47 / 3e-05 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G35640 45 / 0.0001 Trihelix Homeodomain-like superfamily protein (.1) AT1G23700 45 / 0.0003 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G117500 [exp] 49 / 1e-05 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.001G066900 [exp] 47 / 5e-05 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.015G105800 [exp] 43 / 0.0008 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.003G163000 [exp] 43 / 0.001 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031672 [exp] 937 / 0 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1) Lus10027398 [exp] 937 / 0 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10026986 [exp] 44 / 0.0005 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020182 [exp] 44 / 0.0007 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G132300.1 pacid=42783698 polypeptide=Potri.012G132300.1.p locus=Potri.012G132300 ID=Potri.012G132300.1.v4.1 annot-version=v4.1 ATGGGTGAAAACAAGGGAGAAACAACCAAGAAACAACAACAACAGCAACTATCTTCTTCTACTTCTCCTTCTCCGAAAGGCCCAATTGAGGAATCAACAG AACTAAGATCTCTACATCATCAGCAGACAACTTCAGCTGTAGTTACTGGTGCTCCATTCATCCCTGCCCCTCTTTTTGTACCAATTGGTGCAACTTCCTC TCCATTTGAGCAACATTTTGAGACAGTAAACCCCAAGAGAGCAAGATACAGTAGTGCACAATGGAAACTATTGCCTTCAGCATCTCAACAACAACAACCA CCAACACAAGCTCAAATGGCTACTGTTGTCTCAAGCGAGGCAACCCCATCGCTAATCACAAACCCTACCCAACAAAAACAACCTCGCACAACGGCAGAAG CTTCCTCTTCAGACACAAACTCATCTCCTTTACGCTCACCTGTCCCGTCACTTTCTGCAGCTTCTGCCCAAGAAACAAGCAAGCCAGAAGGAGAACCACA TCAACATCAATTTAGGAAAGGAAAATATGTGAGCCCAGTTTGGAAACCCAATGAGATGTTATGGCTAGCCAGGGCTTGGAGGTTCCAGTACCAAGGTGGT TCTGATTTGACTTCAAGAGTTGAACAGCTGCCAGAAACCACTACTGGTCAAGTCACTAGTGGTGATACAGCTATTGCAGTCCAGTCAACAAGAGGGAAAA CTAGAGCCGATAAAGATAGAGAAGTTGCAGAGTTTTTGAATAGACATGATGTTCATAGAGATGCAAAAACTGCAGGTACTAAATGGGATAACATGCTTGG GGAGTTTAGGAAGGTTTATGAATGGGAAAGAGGTGATAAGAGAGAACAGATGGGGAAGAGTTATTTTAGACTTTCACCTTATGAGAGAAAGGCACATAGA TTACCTGCTTCGTTTGATGAAGAAGTTTTTGAGGAGTTATCTCAATTTATGGGTCCTAAAATGAGAACTCAAAGCAGAGGACCTTCACTCAGTGGTTCTG GTGATGATAGCAGTAGGGGAACCTCTCTTGCTGCTGCAAGAGCTCTCCCTCCACCCCCTCCTTTCAAAGAGGATGATCTCTCACTCTCAGGAAGGACAAG ACAACTGGTTTTGACAAGTGGAGGTGAAGCTTACTTTCATGGTACAAGAGGGAGTTTACTAGGGTTTGATACTGCCGTGGATGCTGCGGCAGGCTCTTCT TCATCTACGAAGGAGCTACGTAGAATTGGTAAAGTAAGAATGACATGGGAAGAATCGGTGAGTTTGTGGGGTGAAGAGGGAGAGCATCATAGAGGGAGAG TTAGGCTTCAAGGATCAAGCTTTTTGAACGCAGATGAACTTACTTTCTTTGATGATTCGATGGTCGCTTGCACCATGGAAGCATTTGAAGATGGTGCTCT TAAAGGTTTTTCTGTTGACAAATTTGTTTCTGGACAACAAATTAAAGTCTTTGGCAGAAGGAAGCCTTCTCCTTCAGCTTCTGTTACTCCTTCTGGTTTC ACTGAAAGAGTTCAGCTTCCATTAACTGAACCCTCAATAAGATTACCTCCATGGGAATTTCAGGATCCAACAGAATACTACGTGGGGTGTCTTAGAGTTC CACCAACAACACTTCCAAGTTTGTTTGAGCTTTCATGGTACTTGCAAGAGCCACCTCCTGAAGAACTAAGATTCCCACTTCGAAGAGACGTGTACAGGGA CTTACCACAAGGCAAAGAACTCTTCTTCACAATATCCAACGATCCCTTAGATTGTAGAGGTATTACTTATGATATTTTAAGCTCAATTATCAGAACTAAC CCTAGTATAAGTGGAGCTACTTCCTCGAGTAGAGACTCTTTCATTGGCGTTTGGGATGATTGCATCAATAGGATCGTGTCCAAGTTTTGTTCTGTTGAGG TTGTTATTGTTAGAAAACAACCCTCTTCACCAATGGTCGATACATTGCAAGATGAGTGGCCAAATGTGACTGGATTTGTTAGAAACTTTTGTTTGTGGAG AGGAGAAGAAACCGACCAATTAAGGGAAGGTCAAGTCGATCCCTCATCATCTATAATAGAGAAGCTTTTGTGGACTTACTTGGACCTCCCCTACATTCTA GGCTACTACGCAGTTGGCTACTCGGTGACATTTTGTGCATTATGTAGATCACAGGATCGTATTATTCGTACTGATCTCTACTCTTTAGACCTTTCTTCAC CAGTTGAGAGGCTGAAAGCTCTAGTCCCATGTTATAGAGTTGCTGGATTATTGCCATTACTAGCTGATCGTTGCTTCAACAACTTCAACAATGGTGGTAC TTACAAGCAATTAGCTTTCAGTGATTTTGAAAGAGTAGATATGGGTAATGGAAACATCATGGAAATGACGCCAAATACAGTGACAAGATTGTTCTCTAGC AGAAGAAAATGGGCAGCGGTCAAAGAAATATACGACTGTTTGGACCATAGAATCCCACATGCAGAATTCATCTACAGATCATCAGAAAAAGATTTGGCTT TGGTTTTCAAGCCAAGAGGGCTTAAATTCAAGCCAAACAATTGCGAACAACTTGTTGAGGCACTGAAATACGTGACCCAAGCTTTGGTAGCATTACACGA CTTATCTTTCATGCATAGAGACCTGAGTTGGGACAAAGTGATGCGAAGAAGCGACAGTGAAAACGAATGGTTCCTTTCTGGCTTCGATGATGCTGTCGGG GCACCACAGCTAAACCCGGTACATGGTATCGGGGAGGCGCGTGGTAGACACGCTCCAGAGATGGGAAGAGGGATGCATGGTGTGAAAGTGGATGTGTGGG GTGTTGGTCACTTGGTGAGGACTTGTGGGTTAGGTCCAAATGGGGTGCCAAAAATACTTAGAGAGTTGCAAAATAGGTGCTTAGACCAGAACCCAGAGCA GAGGCCTACTGCCGCCGATTGTTATCACCACTTGCTGCAGGTGCAGTCGTCTTTGCAGTCATCTTCATCTGGAGTTCCATATTGA
AA sequence Show only first row Show all	>Potri.012G132300.1 pacid=42783698 polypeptide=Potri.012G132300.1.p locus=Potri.012G132300 ID=Potri.012G132300.1.v4.1 annot-version=v4.1 MGENKGETTKKQQQQQLSSSTSPSPKGPIEESTELRSLHHQQTTSAVVTGAPFIPAPLFVPIGATSSPFEQHFETVNPKRARYSSAQWKLLPSASQQQQP PTQAQMATVVSSEATPSLITNPTQQKQPRTTAEASSSDTNSSPLRSPVPSLSAASAQETSKPEGEPHQHQFRKGKYVSPVWKPNEMLWLARAWRFQYQGG SDLTSRVEQLPETTTGQVTSGDTAIAVQSTRGKTRADKDREVAEFLNRHDVHRDAKTAGTKWDNMLGEFRKVYEWERGDKREQMGKSYFRLSPYERKAHR LPASFDEEVFEELSQFMGPKMRTQSRGPSLSGSGDDSSRGTSLAAARALPPPPPFKEDDLSLSGRTRQLVLTSGGEAYFHGTRGSLLGFDTAVDAAAGSS SSTKELRRIGKVRMTWEESVSLWGEEGEHHRGRVRLQGSSFLNADELTFFDDSMVACTMEAFEDGALKGFSVDKFVSGQQIKVFGRRKPSPSASVTPSGF TERVQLPLTEPSIRLPPWEFQDPTEYYVGCLRVPPTTLPSLFELSWYLQEPPPEELRFPLRRDVYRDLPQGKELFFTISNDPLDCRGITYDILSSIIRTN PSISGATSSSRDSFIGVWDDCINRIVSKFCSVEVVIVRKQPSSPMVDTLQDEWPNVTGFVRNFCLWRGEETDQLREGQVDPSSSIIEKLLWTYLDLPYIL GYYAVGYSVTFCALCRSQDRIIRTDLYSLDLSSPVERLKALVPCYRVAGLLPLLADRCFNNFNNGGTYKQLAFSDFERVDMGNGNIMEMTPNTVTRLFSS RRKWAAVKEIYDCLDHRIPHAEFIYRSSEKDLALVFKPRGLKFKPNNCEQLVEALKYVTQALVALHDLSFMHRDLSWDKVMRRSDSENEWFLSGFDDAVG APQLNPVHGIGEARGRHAPEMGRGMHGVKVDVWGVGHLVRTCGLGPNGVPKILRELQNRCLDQNPEQRPTAADCYHHLLQVQSSLQSSSSGVPY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51800	Trihelix		Protein kinase superfamily pro...		Potri.012G132300 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.003G065000 [exp]	3.74	0.8206
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177900 [exp]	6.32	0.8341
AT5G04470		SIM	SIAMESE, cyclin-dependent prot...		Potri.010G231700 [exp]	14.79	0.8489
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	18.49	0.8425
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G275700 [exp]	18.70	0.8344
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	21.49	0.8366
AT2G45260			Plant protein of unknown funct...		Potri.013G155400 [exp]	22.93	0.8441
					Potri.004G182966 [exp]	25.92	0.8071
AT4G09530			SAUR-like auxin-responsive pro...		Potri.019G082100 [exp]	31.74	0.7386
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128100 [exp]	32.43	0.8397

Compare expression of checked genes

Potri.012G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.