Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GA20.1,GA20ox6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 522 / 0 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 515 / 0 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 501 / 2e-178 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G60980 477 / 4e-169 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT1G44090 324 / 1e-108 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT5G05600 185 / 6e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 183 / 7e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 181 / 2e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 177 / 2e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT3G55970 177 / 7e-52 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134600 [exp] 746 / 0 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 548 / 0 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G073700 [exp] 518 / 0 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G103800 [exp] 419 / 6e-146 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G065400 [exp] 403 / 8e-140 AT5G51810 402 / 8e-140 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 399 / 2e-138 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 378 / 1e-130 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.012G006300 [exp] 203 / 4e-62 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 202 / 7e-62 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 572 / 0 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 566 / 0 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10015016 [exp] 518 / 0 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006722 [exp] 517 / 0 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10006350 [exp] 513 / 0 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10036539 [exp] 486 / 3e-172 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10041390 [exp] 484 / 1e-171 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10038894 [exp] 384 / 3e-132 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10015252 [exp] 186 / 3e-55 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10004808 [exp] 184 / 1e-54 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.012G132400.1 pacid=42783637 polypeptide=Potri.012G132400.1.p locus=Potri.012G132400 ID=Potri.012G132400.1.v4.1 annot-version=v4.1 ATGGCAATAGATTGCATCAAAACCATGCCTTCAAAAACCACCCATCATCACCATCCAAAAGATCAAGATCAATGCAAAGATGATAACAAGTCTTTAGTGT TTGATGCACAAGTTCTTAGATACCAATCAAGCATACCTCAACAGTTCATTTGGCCTGACCATGAAAAGCCTAGTGCTAATGCACCTGAACTCCAAGTTCC ACTTATAGACTTGGGTGATTTCCTCTCTGGTAACCCTGATGCTGCAATGGAAGCTTCAAGACTTGTTGGTGAAGCATGTCAAAAACATGGTTTCTTTCTT GTTGTTAATCATGGAGTTGATAAGACACTCATTGCTCATGCTCTTAATTACATGGACAACTTCTTTGAATTGCCTCTTTCTGAGAAACAAAAGGCTCAAA GAAAAATTGGCGAGTCTTGTGGATATGCTAGTAGCTTTACTGGCAGGTTTTCCTCCAAACTTCCATGGAAAGAAACACTTTCTTTTAGCTATACAGCTGA GAAGAATTCATCAAAACATATTGAGCAATATTTTCATGACAGAATGGGGGAAGACTTCGCCAAATTCGGAAGGGTGTACCAGGATTACTGCGAGGCCATG AGCACTTTGTCACTAGGGATCATGGAGCTATTAGGAATGAGCCTTGGTGTGAGCAGAGCACATTTCAGAGAATATTTCGAAGAGAATGATTCAATAATGA GGCTTAACTACTACCCTCCATGCCAAAAGCCTGAACTTACTTTAGGAACTGGTCCTCATTGTGATCCAACTTCTTTAACCATCCTTCATCAAGACCAAGT GGGTGGTCTTCAAGTGTATGTAGACAACGAATGGTGTTCGATTAGCCCCAATTTCGACGCTTTTGTCGTTAACATTGGCGACACCTTCATGGCTCTATCA AATGGTAGATACAAGAGTTGTTTGCACCGAGCGGTGGTGAACAGCCAAACGCCAAGAAAATCTCTTGCTTTCTTCTTGTGTCCAAGGAATGACAAGAAGG TAACTCCACCAAAGGAATTAGTGGACACATGCAATCCAAGAATATATCCAGATTTCACATGGCCTATGTTGCTTGAATTCACACAAAAGCATTACAGAGC TGACATGAAGACACTTGAGATGTTCACAAATTGGCTTCAACAAAGAAATGTTAGCTGA
AA sequence Show only first row Show all	>Potri.012G132400.1 pacid=42783637 polypeptide=Potri.012G132400.1.p locus=Potri.012G132400 ID=Potri.012G132400.1.v4.1 annot-version=v4.1 MAIDCIKTMPSKTTHHHHPKDQDQCKDDNKSLVFDAQVLRYQSSIPQQFIWPDHEKPSANAPELQVPLIDLGDFLSGNPDAAMEASRLVGEACQKHGFFL VVNHGVDKTLIAHALNYMDNFFELPLSEKQKAQRKIGESCGYASSFTGRFSSKLPWKETLSFSYTAEKNSSKHIEQYFHDRMGEDFAKFGRVYQDYCEAM STLSLGIMELLGMSLGVSRAHFREYFEENDSIMRLNYYPPCQKPELTLGTGPHCDPTSLTILHQDQVGGLQVYVDNEWCSISPNFDAFVVNIGDTFMALS NGRYKSCLHRAVVNSQTPRKSLAFFLCPRNDKKVTPPKELVDTCNPRIYPDFTWPMLLEFTQKHYRADMKTLEMFTNWLQQRNVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	0	1	Pt-GA20.1,GA20ox6
					Potri.001G410554 [exp]	2.00	0.9052
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.018G054800 [exp]	3.74	0.8362
AT5G41460			Protein of unknown function (D...		Potri.015G106101 [exp]	3.87	0.8964
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	4.47	0.8992
AT4G33040			Thioredoxin superfamily protei...		Potri.006G226900 [exp]	4.58	0.8736
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	5.47	0.8703
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.011G102500 [exp]	5.74	0.8648	Pt-TDY1.1
AT5G66815			unknown protein		Potri.014G034500 [exp]	7.34	0.8892
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G029800 [exp]	9.79	0.7509
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	9.79	0.8446

Compare expression of checked genes

Potri.012G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.