Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGM.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51820 1029 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) AT1G70730 687 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT1G23190 679 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134700 [exp] 1129 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.010G109500 [exp] 691 / 0 AT1G70730 1006 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Potri.008G132500 [exp] 689 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031669 [exp] 1021 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10027400 [exp] 988 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10001596 [exp] 696 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10021777 [exp] 696 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10034595 [exp] 694 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10003712 [exp] 690 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00408 [poplar] [flax] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.012G132500.1 pacid=42782765 polypeptide=Potri.012G132500.1.p locus=Potri.012G132500 ID=Potri.012G132500.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTACTTCTTGTTTGAGACTTGAAAATGTTATCTTTTCATCAACTTATAGAAAGCTGAGGCAAACTAATGCAAATGGCAGTGTCCTCCTCT CTTCACCTATCCGTTCTTTCTCTCTTTTATCATCATCTTCTTTGTTTTCACCAAAATTTGCTCTCTTAAAAAATTTACATTCAGTTAGTTCTTCCCTCTC TGTCAAAGCTTCCTCTTCTACTGCCATTGCTGAACCTGAAGGCATCAAGATTAATTCAGTGTCTACAAAGCCAATTGAGGGTCAGAAGACAGGGACAAGT GGTCTGCGAAAGAAGGTTAAGATTTTCAAGGAGGAAAACTACCTTGCAAACTGGATTCAGGCATTGTTTAATTCATTGCCACCAGAGGATTACAAGAATG GAGTGTTGGTCTTAGGAGGGGATGGTCGTTACTTCAACCTAGAAGCTTCACAGATAATCATCAAAATTGCTGCTGGGAATGGTGTTGGTAAAATCCTTGT CGGCAAGGAAGGTATTATGTCCACTCCAGCTGTTTCTGCTGTGATCCGAGAGAGGAAGGCCAATGGTGGATTTATAATGAGTGCAAGTCATAATCCTGGA GGACCTGAATATGATTGGGGTATCAAGTTTAATTACAACAGTGGGCAACCTGCACCTGAATCCATCACTGACAAGATATATGGAAACACCCTTTCTATAT CTGAGATTAAGATGGCAGACATTCCTGATGTTGATCTTTCTACTCTCGGAATCACAAAATATGGAAACTTTAGTGTTGAAGTAGTAGACCCAGTTTCTGA TTATTTGGAGTTAATGGAGAATGTATTTGATTTTGAGCTCATCAAAAGTCTCCTTTCTCGGTCTGATTTCAGATTTATATTTGACGCCATGCATGCTGTT ACTGGGGCTTATGCAAAACCTATCTTTGTGGACAAGCTTGGGGCCAGTCTGGATTCAATTTCAAATGGAGTGCCTCTGGAGGATTTTGGGCATGGCCATC CAGATCCTAATCTTACATATGCCAAGGGCTTGGTCGACATCATGTATGCAGAGAACGGGCCAGATTTTGGAGCTGCAAGTGATGGAGACGGGGACAGAAA CATGGTCCTAGGTAGAGGGTTTTTTGTCACTCCTTCAGATTCTGTCGCTATCATTGCTGCCAATGTGCAAGCCATTCCATACTTTACAAGTGGCCCCAAG GGTTTAGCTCGGTCCATGCCAACAAGTGGTGCTCTAGATCGTGTGGCTGAAAAATTGAATCTTCCATTTTTTGAGGTCCCTACTGGTTGGAAATTTTTTG GGAATCTCATGGATGCCGGAAAATTGTCAATTTGTGGTGAAGAAAGTTTTGGAACTGGTTCTGATCACATTCGTGAGAAGGATGGCATATGGGCTGTTTT AGCATGGCTTTCGATTATTGCATACAGAAACAAAGACAAGAAACCAGGGGAGAAGTTAGTATCTGTTGCTGATGTTGTGAAAGAGCACTGGGCAACCTAT GGAAGAAATTTCTTTTCTAGATACGATTATGAAGAATGTGAATCAGAAGGTGCCAACAAAATGATACAGTATCTTAGAGATTTGGTCTCTAAGAGCAAAC CAGGTGACAAGTATGGAAATTACACCCTTCAGTTTGCTGATGACTTTACATACACTGATCCTGTGGATGGAAGTGTGGTATCAAAGCAAGGCATCCGGTT TGTTTTCACTGATGGATCGAGGATCATATTCCGTCTATCTGGAACTGGATCAGCAGGTGCAACTGTCAGAATCTACGTTGAACAGTTTGAACCAGATGTC TCTAAACATGAGATGGATGCTCAAATAGCCCTAAAACCATTAATAGATCTGGCATTGTCCGTATCAAAGTTGAAAGACTTCACAGGAAGGGACAAGCCTA CAGTCATCACTTGA
AA sequence Show only first row Show all	>Potri.012G132500.1 pacid=42782765 polypeptide=Potri.012G132500.1.p locus=Potri.012G132500 ID=Potri.012G132500.1.v4.1 annot-version=v4.1 MASSTSCLRLENVIFSSTYRKLRQTNANGSVLLSSPIRSFSLLSSSSLFSPKFALLKNLHSVSSSLSVKASSSTAIAEPEGIKINSVSTKPIEGQKTGTS GLRKKVKIFKEENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNLEASQIIIKIAAGNGVGKILVGKEGIMSTPAVSAVIRERKANGGFIMSASHNPG GPEYDWGIKFNYNSGQPAPESITDKIYGNTLSISEIKMADIPDVDLSTLGITKYGNFSVEVVDPVSDYLELMENVFDFELIKSLLSRSDFRFIFDAMHAV TGAYAKPIFVDKLGASLDSISNGVPLEDFGHGHPDPNLTYAKGLVDIMYAENGPDFGAASDGDGDRNMVLGRGFFVTPSDSVAIIAANVQAIPYFTSGPK GLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYRNKDKKPGEKLVSVADVVKEHWATY GRNFFSRYDYEECESEGANKMIQYLRDLVSKSKPGDKYGNYTLQFADDFTYTDPVDGSVVSKQGIRFVFTDGSRIIFRLSGTGSAGATVRIYVEQFEPDV SKHEMDAQIALKPLIDLALSVSKLKDFTGRDKPTVIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.012G132500 [exp]	0	1	Pt-PGM.4
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.019G040100 [exp]	7.61	0.9313
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.008G172700 [exp]	11.87	0.9267	GATB.1
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	12.24	0.9336
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	18.30	0.9228
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	20.56	0.8883
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.008G067500 [exp]	23.49	0.8705
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	29.32	0.9230
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	33.40	0.9205	CPFTSY.1
AT2G23390			unknown protein		Potri.004G228500 [exp]	40.69	0.9091
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	41.95	0.9174

Compare expression of checked genes

Potri.012G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.