Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62170 247 / 1e-71 unknown protein AT5G51850 115 / 9e-27 unknown protein AT4G25430 89 / 2e-18 unknown protein AT1G74160 47 / 4e-05 unknown protein AT5G15580 43 / 0.001 LNG1 longifolia1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135200 [exp] 900 / 0 AT5G62170 239 / 2e-68 unknown protein Potri.014G194600 [exp] 52 / 2e-06 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 45 / 0.0002 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 44 / 0.0004 AT3G53540 234 / 1e-64 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031666 [exp] 210 / 9e-58 AT5G62170 213 / 3e-59 unknown protein Lus10027402 [exp] 155 / 1e-40 AT5G62170 161 / 3e-43 unknown protein Lus10027403 [exp] 72 / 1e-13 AT5G62170 84 / 4e-18 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.012G132900.1 pacid=42783137 polypeptide=Potri.012G132900.1.p locus=Potri.012G132900 ID=Potri.012G132900.1.v4.1 annot-version=v4.1 ATGGGAAAGGAATGGTATTATTGGGGTGGTGGTAAAACCTTGAAGAAAGGTGGTGGTAGTGGTGGTGGCCGTGAAGGTGGGAGAGAGGGAGAGAAAGATA CTGCTAATTTATCTACTGGTTGTATGTGTGCTGTGTTTCAGTTATTTGCTTTAAATCAGTTTCAACAACAGTCTTCTAACGTTCTTCAGCCCAACTCTTT CCTTCCTCTGCAAGATCATCCAATCCCAAAAGGTGTTGAAGCACCAAGGAATAGCTTGGAATTGGAAGAGGAACCTCCATTGCCATCATCAAAAGACGAA AATCTCAATATCCCTATTGGTATTCAAATTAAAACAAAAGGAGTTCCAAATGATTCATCTTCATCAGAGATCAGCTCTTCTCCAGGAACCAAGACACCAA ATTTGGTAGCTAGACTTATGGGGCTTGATCTTCTACCTGATCATCTTACCAACTCGCCAAGCCATTCTTCTTCATCAACTCTTGGCACACCAAACCTTCC ACCAAAATCCCATTTTCATTACCAACATTGCAGACCTCAACAACCACGTCCTCTCCATAGCAAAACAAGTAGCCCTCGAAGTTGTTTGGACCATGATTTC TCAGGCACTCGTTCTTTGCCTGAGACACCAAGAATATCGTCAGCTAGAAGATCAGATGTAGAGCACCGTTTGTCACTCCAAATCAACAAAGAAAATGTAA GTGAAGACTTGGCGCTCTCTCGTCTCTCATCTTTGAAAAGAATAGAGCTCAAAGTTGAAGAAGAGAACAGAAGTCCAGGCCACTATGCAAGGCAAATTGT GAAGCAAGTTAAAGAAAGTGTGAGCAGGAAAGTCGGCTTGGATATTACAAACACGGTAAGAGATAGAGAGCAAACAAGAAGAAGAGATCAAGAGCTTGAG CTTATTAGTCAATACAAGTCCAAGAAAATTCTCTCCAAAGATCCAAGTAGCACAAAAATTGTTGATGTTACAGGTAATAGTCCAGGAAACCATTACGTGA CCACAACTTCTTGCTCTCCAAGACTCAAATTCTTGGAACCCAAAAACAAGCCAATCACAACTCTACCTTGCAAGGACCACAATAATAATTCTCATTCTAA AAAACCATCACTACTTCTGTCTCAAAATACCAAACCTTCAACAAAGCCAGATTTGCCTCAGGTCCTCCTGCAGGATCAATGCCACCATCAGCATCAGCAG AGACCTTCCAAGAATTGCAAGAAAGTGACTGAAGAAAAATTTGATCCACCACCATCAAGACTCATCAAGAAACCTCTAAAATCATCAGATATTATCAGAA CCAACAAGGAAGATCCATTTGTACTTTCAACATCAGTTACAAGAGCCAATATTCCTGACAAGAAATGCAAGAAAACCCCGTTATCAAATGACCTCAACAT CTCTCTCCCAACTCTCCTTCCTGTCAAGAAAGACCCTACTCCTCCAGCGACAAAAATCCCTCAAAAACAGGTATCAAATGTTGCTCAAGAATCGAAATGG AGCTCACAGTTATCTAGTTGTTCGAGCCAGTCGTACAAACAACAACAAGCGACGCGTAGGCTCGATTCCCGAGAAAAAAACAATGAGGATAGGTGTAATA ACGGTGTCGCCACCAAGATTATCCCCACCGGAGATGGAGCATCAGCAGAAGAATATGAGTACATTACTAGAATACTAAAACGTACAGGTGTAGACAAAGA TACCCCGGTGTCTTTTACTAGGTGGTTTTCTCCTTCTCATCCTCTAAACCCTTCAACTTTTTACTACCTCGAACATCTTACCACTCCTAGCTATGTTACC AGTACTTGGGAGAATAATCGCACCTTAAACCGTCGAAGCAATCGAAAATTGTTGTTCAATCTTGTTGATGAAATTTTGGTCGACATTTTGCGTCCATACA TCAACATGAAACCTTGGAGTAGTACTAGTTTAGGCATGTTTAGTCAGCAGGATCGAATTAGTCACATGAATGGGTCGCATTTGGTTCAAATGTTATGTAC AAAGCTTAGGAGCTTCCCTTGCGCTGATTGTCACGATCTCAAAGACATTGATGGGTTAATAGACAAAGATTTGGCCCAATTGAAGGATCAAAGTGAAATT GCATTCGGAGAAGAAGGTGAAAGGATTGTAATGGAAGTGGAGAAGGACATCATGGACACATTAATACATGAAACGGCTATGATTTTTTATGGTGAATAA
AA sequence Show only first row Show all	>Potri.012G132900.1 pacid=42783137 polypeptide=Potri.012G132900.1.p locus=Potri.012G132900 ID=Potri.012G132900.1.v4.1 annot-version=v4.1 MGKEWYYWGGGKTLKKGGGSGGGREGGREGEKDTANLSTGCMCAVFQLFALNQFQQQSSNVLQPNSFLPLQDHPIPKGVEAPRNSLELEEEPPLPSSKDE NLNIPIGIQIKTKGVPNDSSSSEISSSPGTKTPNLVARLMGLDLLPDHLTNSPSHSSSSTLGTPNLPPKSHFHYQHCRPQQPRPLHSKTSSPRSCLDHDF SGTRSLPETPRISSARRSDVEHRLSLQINKENVSEDLALSRLSSLKRIELKVEEENRSPGHYARQIVKQVKESVSRKVGLDITNTVRDREQTRRRDQELE LISQYKSKKILSKDPSSTKIVDVTGNSPGNHYVTTTSCSPRLKFLEPKNKPITTLPCKDHNNNSHSKKPSLLLSQNTKPSTKPDLPQVLLQDQCHHQHQQ RPSKNCKKVTEEKFDPPPSRLIKKPLKSSDIIRTNKEDPFVLSTSVTRANIPDKKCKKTPLSNDLNISLPTLLPVKKDPTPPATKIPQKQVSNVAQESKW SSQLSSCSSQSYKQQQATRRLDSREKNNEDRCNNGVATKIIPTGDGASAEEYEYITRILKRTGVDKDTPVSFTRWFSPSHPLNPSTFYYLEHLTTPSYVT STWENNRTLNRRSNRKLLFNLVDEILVDILRPYINMKPWSSTSLGMFSQQDRISHMNGSHLVQMLCTKLRSFPCADCHDLKDIDGLIDKDLAQLKDQSEI AFGEEGERIVMEVEKDIMDTLIHETAMIFYGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62170			unknown protein		Potri.012G132900 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	2.00	0.7441	Pt-ANN5.2
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	3.46	0.7526
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	6.32	0.7278
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	9.38	0.7013
AT3G05390			unknown protein		Potri.004G231100 [exp]	13.96	0.7567
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	23.13	0.7440
AT4G01140			Protein of unknown function (D...		Potri.002G166900 [exp]	26.38	0.7205
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	34.94	0.6850
AT2G47485			unknown protein		Potri.017G119800 [exp]	34.98	0.7265
AT4G20800			FAD-binding Berberine family p...		Potri.011G156000 [exp]	39.19	0.7335

Compare expression of checked genes

Potri.012G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.