Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59090 644 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59100 637 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 635 / 0 ATSBT4.13 subtilase 4.13 (.1) AT3G46850 634 / 0 Subtilase family protein (.1) AT5G58820 627 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 626 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G58840 622 / 0 Subtilase family protein (.1) AT5G59190 620 / 0 subtilase family protein (.1) AT3G46840 619 / 0 Subtilase family protein (.1) AT5G58830 619 / 0 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G196800 [exp] 769 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G120101 [exp] 763 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.010G196900 [exp] 747 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 696 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 668 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 652 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 623 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 615 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G144500 [exp] 565 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002964 [exp] 779 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 747 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10042555 [exp] 743 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 736 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009867 [exp] 719 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 668 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004683 [exp] 657 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 642 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 626 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016482 [exp] 613 / 0 AT3G46850 709 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.012G133200.2 pacid=42783091 polypeptide=Potri.012G133200.2.p locus=Potri.012G133200 ID=Potri.012G133200.2.v4.1 annot-version=v4.1 ATGCTAAAGACAGGATTTAAATATATTTTACTTTGCATAGTAAAAAGAGTTCTGAAACTTAGCTCCATGGCCAAGTTGTTGCACCTCTCTATTTTCTTTC TTGCAGCATTGGTGCTGCAATGCCATTGCGCTGAAGACGACAGGAAGTCTCATGTTGTGTACATGGGAGATCGTCCCAAGGATGCTGCATCAGTCGCGTC GACGCACCACAATATGCTAGCAGAAGTACTTGGCAGTTCATCGGAGGCTAGAGAATCACTAATTTATAGTTACGGGAAGAGTTTCAATGGATTTGTAGCC AAACTATCAGACAAAGAAGTTGCCAGGATCAAAGAAATGGAGGGAGTGGTTTCAGTGTTCCCTAATGCCCAACTGCAAGTGCACACTACAAGATCATGGG ATTTCATGGGCCTCCCTGAATCTCATCCCAGGTTGTCTGCTGAAGGAGATGTTATTGTTGGGTTGCTAGATACAGGAGTTTGGCCTGAAAACCCAAGTTT CAGTGATGAAGGCTTTGATCCACCACCAGCAAAATGGAAGGGTATCTGCCAGGGTGCAAACAATTTCACCTGCAACAAAAAGGTCATTGGAGCCCGTTTC TATGATCTGGAGAATATCTTTGATCCTAGGTATGATATCAAATCCCCGAGGGACACGTTAGGACATGGAAGCCATACTGCTTCAACAGCAGCAGGGATAG CTACGAATGCAAGCTACTTCGGATTAGCTGGAGGTGTGGCTAGAGGAGGAGTTCCGAGTGCAAGAATTGCTGTCTACAAAGTATGTTGGGCAAGTGGCTG TACCTCTGCGGATATCCTAGCAGCTTTTGAAGATGCAATAGCAGATGGGGTGGACCTTCTATCTGTTTCACTAGGGAGTGATTTTCCAGCTCCGTATCAC GAAGATGTAATTGCCATCGGAACTTTCCATGCCATGAAAAATGGAATTTTAACTTCCTGTTCTGCAGGAAACAGTGGACCAAACAGGAGACAAGTCTCAA ACTATGCACCTTGGGCACTAACTGTAGCTGCAAGCACCATTGACAGGATTTTTTCCACTAAAGTCGTGCTCGGAAACGGACAGATCTTCCTTGGAAATTC GCTCAACATCTTCGATCTCCACGGAAAAACATTCCCATTGATCTATTCTGGAGACTCCGCAAACTATACTGCTGGAGCTGATCCTGAATTAGCAGCATGG TGCTTTCCCGGAACTCTAGCCCCTCTAATAACTAAAGGAGGAGTGGTCATGTGCGATATTCCTAACGCACTTGCCTTAGTGCAAGGGTCAGCGGGTGTTA TAATGCCCGTGTCCATAGATGAATCTATACCTTTTCCCTTCCCTCTTTCTCTGATCAGTCCTGAGGACTACTCTCAGCTTCTGGACTACATGAGATCCAC ACAGACTCCTACAGCAACCATTTTGATGACTGAGCCAGTGAAGGATGTCATGGCTCCCACAGTAGTCTCTTTCTCATCAAGAGGTCCAAGCCCCATTACT CCTGATATCCTCAAGCCTGACCTTACTGCCCCTGGTCTGAACATCCTTGCTGCCTGGTCTCCCCTAGGAGGTGCTTCGATATCCCCCTGGGATGATAGGA CAGTAGACTACTTTGTAATCTCTGGTACATCCATGTCTTGCCCACATGTTACTGGTGTTGCAGCATTTGTTAAAGCAGCTCACCCATCATGGTCTCCTGC TGCTATCAAGTCTGCCCTCATGACCACAGCTACAATTATGGATTCCAGGAAGAATGCAGATGCCGAATTTGCCTACGGATCTGGACAGATCGATCCATTG AAGGCACTAAACCCAGGGCTAATCTATAATGCAAGTGAAGCAGATTATGTCAATTTCCTATGCAAGGAGGGTTACAACACTACCCTTGTAAGAATAATCA GTGGAGACAATAGCACTTGTCCAAGCAACGAACTAGGCAAAGCATGGGATCTTAACTACCCAACATTTGCACTCTCATTGTTAGATGGAGAGACTGTCAT AGCTACATTCCCAAGAACTGTCACCAATGTGGGCACTCCAAACAGCACTTACTATGCAAGGGTTTCAATGCCATCCCAATTCACTGTTACAGTACAACCA TCAGTTCTTTCCTTCTCACGGGTTGGAGAGGAGAAAACATTCACTGTTAAGATTACAGGAGCACCCATAGTTAACACGCCTATCGTCTCGGGTTCACTAG AATGGACAAACGGGGAATATGTAGTTAGGAGTCCAATTGCTGTTTTCAACAACATGCCTTCAATTTTTTCATCCATTGATGAGCAGCCACAATCAAAACC CAAGTTTAAAGGTCCATGGGAGGGTTCCACTTCCACCATCTATCACAAGAAGGGCACCTTTAAGAGCATGCAGAGGACAGATCGTACTGATGGCTTCGGC GGCTTGGTATCCAATAGCAGGTTGGGTTATCACAAGCACTAA
AA sequence Show only first row Show all	>Potri.012G133200.2 pacid=42783091 polypeptide=Potri.012G133200.2.p locus=Potri.012G133200 ID=Potri.012G133200.2.v4.1 annot-version=v4.1 MLKTGFKYILLCIVKRVLKLSSMAKLLHLSIFFLAALVLQCHCAEDDRKSHVVYMGDRPKDAASVASTHHNMLAEVLGSSSEARESLIYSYGKSFNGFVA KLSDKEVARIKEMEGVVSVFPNAQLQVHTTRSWDFMGLPESHPRLSAEGDVIVGLLDTGVWPENPSFSDEGFDPPPAKWKGICQGANNFTCNKKVIGARF YDLENIFDPRYDIKSPRDTLGHGSHTASTAAGIATNASYFGLAGGVARGGVPSARIAVYKVCWASGCTSADILAAFEDAIADGVDLLSVSLGSDFPAPYH EDVIAIGTFHAMKNGILTSCSAGNSGPNRRQVSNYAPWALTVAASTIDRIFSTKVVLGNGQIFLGNSLNIFDLHGKTFPLIYSGDSANYTAGADPELAAW CFPGTLAPLITKGGVVMCDIPNALALVQGSAGVIMPVSIDESIPFPFPLSLISPEDYSQLLDYMRSTQTPTATILMTEPVKDVMAPTVVSFSSRGPSPIT PDILKPDLTAPGLNILAAWSPLGGASISPWDDRTVDYFVISGTSMSCPHVTGVAAFVKAAHPSWSPAAIKSALMTTATIMDSRKNADAEFAYGSGQIDPL KALNPGLIYNASEADYVNFLCKEGYNTTLVRIISGDNSTCPSNELGKAWDLNYPTFALSLLDGETVIATFPRTVTNVGTPNSTYYARVSMPSQFTVTVQP SVLSFSRVGEEKTFTVKITGAPIVNTPIVSGSLEWTNGEYVVRSPIAVFNNMPSIFSSIDEQPQSKPKFKGPWEGSTSTIYHKKGTFKSMQRTDRTDGFG GLVSNSRLGYHKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	0	1
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	1.41	0.9993
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	2.00	0.9989	CHI3.4
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	2.00	0.9993
					Potri.005G130750 [exp]	2.23	0.9989
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	2.44	0.9990
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	2.44	0.9985	3
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G190800 [exp]	5.83	0.9961
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	6.48	0.9958
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	6.63	0.9981
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	7.21	0.9980	MALD1.1

Compare expression of checked genes

Potri.012G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.