Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23030 578 / 0 MATE efflux family protein (.1) AT5G52050 529 / 0 MATE efflux family protein (.1) AT4G29140 495 / 3e-171 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G58340 480 / 2e-165 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G19700 473 / 5e-163 MATE efflux family protein (.1) AT2G38510 420 / 2e-142 MATE efflux family protein (.1) AT1G71870 401 / 1e-134 MATE efflux family protein (.1) AT5G49130 360 / 8e-119 MATE efflux family protein (.1) AT4G22790 241 / 5e-73 MATE efflux family protein (.1) AT1G15170 226 / 2e-67 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135600 [exp] 931 / 0 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 728 / 0 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 522 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 461 / 4e-158 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 416 / 2e-140 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 409 / 5e-138 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 400 / 9e-135 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 385 / 2e-128 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 266 / 6e-83 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027417 [exp] 682 / 0 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 640 / 0 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 530 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 468 / 1e-160 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 437 / 2e-148 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 392 / 3e-130 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 369 / 3e-122 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 365 / 5e-122 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 300 / 9e-96 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 243 / 9e-74 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.012G133500.3 pacid=42782992 polypeptide=Potri.012G133500.3.p locus=Potri.012G133500 ID=Potri.012G133500.3.v4.1 annot-version=v4.1 ATGTGTCAGCTAAACTCTTCTACTCTATCCTGCAAATGCAATCAAGACTTCTCTTTCCTCATCTCCATCAAAGACCAAGAGCCCAAAATGTTCACCTCAT TATTGATCCCTAAAAGCCCAACATGTATACCACAAGAAACCCAGGAACCAGACACCACCAACCTCTCCCTTGCTATCAGAGAAGCAATATCCATAGCCAA AATAGCTTTCCCCATGATACTAACAGGCCTCTTGCTCTATCCTCGCTCAATGATCTCCATGCTCTTCCTTGGCCGCCTCGGGGAGCTAGCCTTAGCTGGT GGCTCACTTGCCGTTGGCTTTGCTAATATAACTGGTTACTCTATCCTCTCTGGCCTGGCCATGGGGATGGAACCAATATGTGGTCAAGCTTTTGGGGCTC AAAAACACCGCCTCCTAGGCTTAACGTTGCAAAGAACAATACTTCTGCTCATTGTTGCTTCACTGCCCATTTCTTTTCTTTGGCTAAACATGAAAAGCAT CCTTCTTTTTTGCGGCCAAGATGAATCAATAGCCACAGAAGCACAGTCATTTCTTGTTTACTCCCTTCCTGACCTTTTAGCTCAATCTTTTTTGCATCCA TTGAGAATCTATCTTAGAACTCAAACAATAACCTTGCCTCTCACATTTTGTGCCACTCTAGCTATTATTCTACACATTCCTATAAACTACTTTCTTGTTA CACACCTAAATTTAGGGACTAAAGGTGTTGCTCTTAGTGGGGTATGGACTAACTTCAATCTTGTAGGTTCTTTGATCATTTATATCCTTGTTTCTGGTGT CCATAAGAAGACATGGGGAGGATTTTCAATGGAGTGCTTCAAAGAATGGAAAACTCTCTTGAATTTGGCCATTCCAAGCTGCATCTCAGTGTGTCTTGAA TGGTGGTGGTATGAGATCATGATCTTGCTATGTGGACTATTGTTAAACCCAAGAGCAACTGTTGCCTCCATGGGCATTTTGATTCAAACAACTGCACTCA TCTACATATTCCCTTCTTCTCTAAGTTTCAGCGTATCAACAAGGGTTGGCAATGAGCTAGGCGCTAACCAGCCCATGAAAGCAAAGCTTGCAGCCAATGT AGGCCTTTCTTTGAGCTTCATTTTTGGGTTTTCAGCTCTAGCTTTTGCAGTTATGGTTAGGAAAGTATGGGCTAGCATGTTCACACAAGACAAAGAGATC ATAGCATTAACATCACTTGTTTTGCCAATAATAGGTCTTTGTGAGCTAGGAAATTGTCCACAAACAACCGGTTGTGGAGTCCTAAGAGGAACAGCCAGAC CAAAAGTTGGGGCAAACATCAACTTGGGATGTTTCTACCTTGTTGGCACGCCAGTGGCAGTATGGTTAGGATTCTATGCAGGGTTTGATTTTGAAGGGTT ATGGCTCGGCCTCCTAGCTGCACAAGGGTCCTGTGTGGTGACCATGCTGCTTGTTTTGGGTAGGACTGATTGGGAATCTGAAGCTAAAAGAGCTAAGGAG TTGACAAATGCTTTGGTTCTTGTTTCCAATGTTGATGACAGCCTACAAGTTGAGGAAAAGAAGCCACCGAATGCTGAAATCAAGGAGGATTCCTTACATT TATTTGAAGAATTAGTTAATCTTTATAAACCTTTACCTGTTTAA
AA sequence Show only first row Show all	>Potri.012G133500.3 pacid=42782992 polypeptide=Potri.012G133500.3.p locus=Potri.012G133500 ID=Potri.012G133500.3.v4.1 annot-version=v4.1 MCQLNSSTLSCKCNQDFSFLISIKDQEPKMFTSLLIPKSPTCIPQETQEPDTTNLSLAIREAISIAKIAFPMILTGLLLYPRSMISMLFLGRLGELALAG GSLAVGFANITGYSILSGLAMGMEPICGQAFGAQKHRLLGLTLQRTILLLIVASLPISFLWLNMKSILLFCGQDESIATEAQSFLVYSLPDLLAQSFLHP LRIYLRTQTITLPLTFCATLAIILHIPINYFLVTHLNLGTKGVALSGVWTNFNLVGSLIIYILVSGVHKKTWGGFSMECFKEWKTLLNLAIPSCISVCLE WWWYEIMILLCGLLLNPRATVASMGILIQTTALIYIFPSSLSFSVSTRVGNELGANQPMKAKLAANVGLSLSFIFGFSALAFAVMVRKVWASMFTQDKEI IALTSLVLPIIGLCELGNCPQTTGCGVLRGTARPKVGANINLGCFYLVGTPVAVWLGFYAGFDFEGLWLGLLAAQGSCVVTMLLVLGRTDWESEAKRAKE LTNALVLVSNVDDSLQVEEKKPPNAEIKEDSLHLFEELVNLYKPLPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23030			MATE efflux family protein (.1...		Potri.012G133500 [exp]	0	1
AT4G39830			Cupredoxin superfamily protein...		Potri.010G171700 [exp]	1.73	0.8316
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	9.48	0.7521
AT5G54860			Major facilitator superfamily ...		Potri.011G137300 [exp]	10.39	0.7386
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	10.58	0.7582
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	24.73	0.7422
					Potri.008G069350 [exp]	28.93	0.6991
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	31.11	0.7350
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	32.74	0.7358
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.018G107500 [exp]	36.00	0.7317
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	39.82	0.7280

Compare expression of checked genes

Potri.012G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.