Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25500 316 / 2e-106 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 283 / 2e-93 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G61860 244 / 2e-79 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 231 / 1e-74 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G02840 64 / 3e-11 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 64 / 3e-11 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 59 / 6e-10 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G53500 58 / 2e-09 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 58 / 2e-09 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G49430 57 / 7e-09 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135800 [exp] 530 / 0 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G153600 [exp] 303 / 7e-103 AT4G25500 264 / 7e-88 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.014G076600 [exp] 298 / 1e-100 AT4G25500 255 / 3e-84 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G175000 [exp] 240 / 4e-78 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G101800 [exp] 238 / 3e-77 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G004600 [exp] 66 / 5e-12 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.002G205025 [exp] 65 / 1e-11 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G129900 [exp] 63 / 7e-11 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.006G215200 [exp] 60 / 6e-10 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015005 [exp] 325 / 3e-104 AT5G52030 461 / 5e-156 TraB family protein (.1.2) Lus10030226 [exp] 238 / 7e-77 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005986 [exp] 233 / 5e-75 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038883 [exp] 215 / 7e-67 AT4G25500 206 / 7e-64 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Lus10015564 [exp] 72 / 3e-14 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 70 / 3e-13 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10008218 [exp] 67 / 4e-12 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 66 / 4e-12 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 66 / 6e-12 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020656 [exp] 59 / 2e-09 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.012G133600.2 pacid=42783272 polypeptide=Potri.012G133600.2.p locus=Potri.012G133600 ID=Potri.012G133600.2.v4.1 annot-version=v4.1 ATGAGGTCTATCTTTTGTGGGAACTTTGAGTATGATGCAAGGCAGACTGAGCTAGAACGGCTATTCAAACGATATGGGAGAGTTGAACGGGTGGATATGA AAGCTGGATTTGCTTTTATTTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGAGGACTTGATCGTGTAGAATTTGGTCGCAAGGGCCGCAGACT TCATGTTGAATGGACAAAGCAAGAACGTGGGGCTAGACAGCCTGGTGGCTCATCAAGAAAATCTGCTAACACAAGGCCATCTAAGACTTTATTTGTTATC AACTTTGACCCTCATCATACTAGGACTAAGGATTTGGAGAGGCACTTTGAGCCATATGGGAGGATAGTGAGTGTAAGGATAAGAAGAAATTTTGCATTTG TTCAGTATGAAGCACAGGAGGATGCCACTAAAGCACTGGATGCAACAAACATGAGCAAGCTGCTGTATCGAGTTATTTCAGTGGAATATGCTGCTCGAGA TGATGGTGAAAGGAAGGATGGACACAGTCCTGATAGAAGTCGTGATAGGTCACCTGATAGGCGAGGACATGATAGGAGGCGTTCTCCAAGTCCTTACCGA AGAGAAAGGGGAAGCACTGATTATGGCCATGGCCCTAGTCCTTATCGCAAAGAGAGGGTTAGCCCAGATTCTGGATGTCGCCGCAGCCCTAGCCCCTATA GGAGAGATAGGGCTAGCCCTGACTATGGCCGGGGTTCAACTCGTAGTCCTTCCAGGAGAGAGAGGGCTGGCAGTGACCATGGCCATGGCCCCAGCCGTGG TCCTTACCGCAAGGACAAGGCTAGTCCTGTCAATGGTAATGGCCCTAGTGATAGTCCTTATCAAAGGGAAGAAAAGCTTAGCCCTGAAAATGGTCGTGTC CCGAGCCGTAGTCCATATGGAAGAGAAAGGCCTAACCCAGACAAAGGCCGTACCTCCAGCCATAGTCCCTCTGAAAGAGATGGGTCTAGCCCTGAAAATG GTCAATGGAGAAGCCCAAGCTCCAATCCTGACAAGAGGGACAGTGCAATTGGAAGAGTTGAAAGCCCTAGACATGAGAGATACCACAGTCAATCACCAGC AGCAGATGAATGA
AA sequence Show only first row Show all	>Potri.012G133600.2 pacid=42783272 polypeptide=Potri.012G133600.2.p locus=Potri.012G133600 ID=Potri.012G133600.2.v4.1 annot-version=v4.1 MRSIFCGNFEYDARQTELERLFKRYGRVERVDMKAGFAFIYMEDERDAEDAIRGLDRVEFGRKGRRLHVEWTKQERGARQPGGSSRKSANTRPSKTLFVI NFDPHHTRTKDLERHFEPYGRIVSVRIRRNFAFVQYEAQEDATKALDATNMSKLLYRVISVEYAARDDGERKDGHSPDRSRDRSPDRRGHDRRRSPSPYR RERGSTDYGHGPSPYRKERVSPDSGCRRSPSPYRRDRASPDYGRGSTRSPSRRERAGSDHGHGPSRGPYRKDKASPVNGNGPSDSPYQREEKLSPENGRV PSRSPYGRERPNPDKGRTSSHSPSERDGSSPENGQWRSPSSNPDKRDSAIGRVESPRHERYHSQSPAADE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.012G133600 [exp]	0	1
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	8.54	0.7367
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	9.69	0.7240
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	10.81	0.7196
AT1G04780			Ankyrin repeat family protein ...		Potri.003G177000 [exp]	18.33	0.6933
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G126000 [exp]	18.76	0.6989
					Potri.005G081700 [exp]	21.44	0.6673
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G215200 [exp]	21.63	0.6864	RSZ33.2
AT1G24330			ARM repeat superfamily protein...		Potri.008G177100 [exp]	24.69	0.6935
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.006G003800 [exp]	28.72	0.6730	Pt-CCSPK1.2
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.014G051200 [exp]	30.74	0.6884

Compare expression of checked genes

Potri.012G133600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.