Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARR13.1,PtRR17
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26660 163 / 4e-47 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 163 / 4e-47 AS2 LBD23 LOB domain-containing protein 23 (.1) AT2G30130 141 / 2e-38 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G31320 129 / 2e-34 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G27650 128 / 3e-34 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G16530 126 / 2e-33 AS2 ASL9, LBD3 LOB DOMAIN-CONTAINING PROTEIN 3, ASYMMETRIC LEAVES 2-like 9 (.1) AT5G66870 130 / 5e-33 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT5G63090 124 / 1e-32 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G23660 128 / 2e-32 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT2G28500 123 / 2e-31 AS2 LBD11 LOB domain-containing protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135900 [exp] 270 / 3e-86 AT3G26660 165 / 2e-53 LOB domain-containing protein 24 (.1) Potri.010G184400 [exp] 144 / 1e-39 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.010G250700 [exp] 142 / 3e-39 AT2G30130 111 / 2e-31 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G281600 [exp] 142 / 4e-39 AT2G30130 248 / 4e-85 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.008G072800 [exp] 142 / 6e-39 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.009G076900 [exp] 142 / 6e-39 AT2G30130 228 / 2e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.005G097800 [exp] 140 / 2e-38 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 138 / 7e-38 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 139 / 1e-37 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031285 [exp] 143 / 4e-39 AT2G30130 226 / 3e-76 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031855 [exp] 142 / 6e-39 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10007525 [exp] 139 / 9e-38 AT2G30130 204 / 1e-67 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10031191 [exp] 137 / 2e-37 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10018275 [exp] 137 / 3e-37 AT1G31320 243 / 2e-83 LOB domain-containing protein 4 (.1) Lus10040638 [exp] 137 / 7e-37 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1) Lus10031769 [exp] 135 / 1e-36 AT1G31320 193 / 8e-64 LOB domain-containing protein 4 (.1) Lus10017431 [exp] 135 / 1e-36 AT2G30130 199 / 1e-65 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Lus10018993 [exp] 131 / 3e-35 AT3G26660 134 / 2e-41 LOB domain-containing protein 24 (.1) Lus10033843 [exp] 127 / 1e-33 AT1G07900 143 / 8e-44 LOB domain-containing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0304 [poplar] [flax] PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.012G133800.3 pacid=42783865 polypeptide=Potri.012G133800.3.p locus=Potri.012G133800 ID=Potri.012G133800.3.v4.1 annot-version=v4.1 ATGGCATCCACTCAGTCTTCCAATGCCCTAAGCTCCTCCCTTCCGAAAATCCATATTTTAATTGTAGATGATGATTCTACATCTCTTTCTGTTGTTTCAG CAACGCTGAAAACAGTTAGCTATAAAGACAATCGCAACCTAGAACTTATTGTGGTCACAGTCAAGAAACCATTTGATGCTTTATCAATTCTTCGACTGAA AAAGGGTTTATTTGACTTAGTTGTGTCTGACCTCCATATGCCTGAGATGAATGGCATGGAACTACAAAAACAAGTGGAAGAAGAATTCAAGCTTCCTGTG ATTATAATGTCCTCAGATGAAAGTAAGAACGTCATATCAAGAAGTTTAGAGGGTGGTGCTGCGTTTTATATAGTGAAACCAGCTAACAAAGTTGATCTCA AGAATGTGTGGCATTATGCAGTTGCAATCAAAACAGGTAACTCCCTTTCAATCAAGGAAATAGAAGGCTCTCGAGAACCATCATATTCTTCTACATTGGT TGAGAGATTATCCCTTGAAGATGTGAACTCTGCAACATCTATCAATGATGAAAAACGTTATAGAAAAAATGGAAGAAAGGAAGAAAGGAAGAGCACAAAG GATGATCAAGAAGTAGATAGTCAGCCTGCCTCGAAAAAGCCTAAGAAGTATCGAATCTTCCTTAAAAAGGTTGCAGAGAGAGGTGGTTGTTCATCGAAGA ACTTGTCAGGACGAGATGATCTTAGGACAAACTTTGCACCTAGCCAACCCTTTATGATGTTCAAAAATGTCCAGCAGGAATATTCCCAACGAGTAACAAG AGCATCAATTCAACCTGGTCTTGGAGGGAACACCATTCCAGCTCTTGGTGGTTCCAGTTTTAGGAACTTGCATTCTCCAAACCAACAGGCTCCGAGCAAC AACTCCATACTTCAATCACCATACGGGCAGTCTCGTTTATTTGGCAATGCTAATTCTGCTAATCAGGCAAACCAAATAAGATCAGGACTGGAATCAAACT ATAGTATTGGAGAAAACATGCCTTCTTATGGAGGTGTGATCCCTAATGGCCTCACTCATGGTACAAGGCCAATGCAAATGTACCATCCGCAAAATCAAGC AAGATCATATCTTCAGAATTTTGGTAGCCCACCACTAATTAACAGGTTTGGTGCTGTTGGAATTCAGGCTACCAACTACGGGTCAGGAGTTGGGGATATA GGAATCATCAACAATTCCTTGAACACCAACAATAATTATGTTGGAATTCGTGTGACTACCGATGGACGCCTCATTGGATCAGGCCAAATGCAACTCAATA CGAATGAACTATCAAATGGCTTTAGTGATGGTGGTCATCCTTGCTTGATGAATTGGGCTCGTAATGGCAACATGAACGTTGCATCTATAGGGTTTAATAT AGCGTCAGAAAATTATGTGGCTCGTAGGGGATCTTTTTCTGCTGGTTTTGAGGGTGCAAACCAATTCTTCCCACCAACACCATTCACTAGTGTTTATCAT GGGAATAGTACTCCAATGCTGCTGCCACCACCACCACCACAGCACCAGCTTGGTCTTGGAAATGGAGGACAAAATGACTTTGTGTTTGGCCTCATGAACA ACAGCCCTCCTATCTTGGGTGGGAATTCTAATCAACAGCCTCAGATTGGCGAAGGTGAACCGAATGTTAGCGACATGCTTTTGGAACCTACCAACAATCC ACCTGCTTATCAGCTTCCACAAGGTGTTGCTCAAATGAGCACTCCCTTGCATGAACTCCTGACTCCGGACTTCTTGAACTCACTTCACATTGATGACAAC ACTCCTCGGAATGAACAACCTTCTAGCCAGGTTCAAAGTGGAGAAGGAGCTATGAACCCCATCTGCGGAAGCGATGCTAATTCAATGGATGGATATTTTC CAAACTTTGATCAGCAAAATGGCAATGGTGACCTTGTGGATTCTGAGCTCAATAACCCTCAACCAGTTGACAATGGGCCAACAGGAAATCAGGCATCTTG CAAGTATTTGAGAAGGAGATGTCCTTCAGATTGCATTTTCTCTCCTTACTTTCCTTCTAATAATCCTCAAAGATTTGCTTGCGTTCACAGAATCTATGGC GCCAGTAATGTTGCAAAAATGCTCCAGCAACTCCCAGCACATTTAAGAGCTGAAGCAGCAAACTCTTTGTATTATGAGGCACAAAGCAGAACTCAGGACC CTGTCTATGGTTGTGTAGGGATTATCTCTTTACTACACCAACAAATTCACGGTGTAGAGAGCCAACTAGCTAAAACAAAAGCTGAAATTGCAGTCCTCAA TTCTCTTGCACAAGAACCTGCTCAAATTCAAGAAAATGAAGTAGAAGCTAGCTTCAACCATTTCTTGCTGGAACAAGACAATATAGCTTCAGGCCAATAT TTTAGCCATTCCACTTGTATTCCTTCTAACTTTATGTAG
AA sequence Show only first row Show all	>Potri.012G133800.3 pacid=42783865 polypeptide=Potri.012G133800.3.p locus=Potri.012G133800 ID=Potri.012G133800.3.v4.1 annot-version=v4.1 MASTQSSNALSSSLPKIHILIVDDDSTSLSVVSATLKTVSYKDNRNLELIVVTVKKPFDALSILRLKKGLFDLVVSDLHMPEMNGMELQKQVEEEFKLPV IIMSSDESKNVISRSLEGGAAFYIVKPANKVDLKNVWHYAVAIKTGNSLSIKEIEGSREPSYSSTLVERLSLEDVNSATSINDEKRYRKNGRKEERKSTK DDQEVDSQPASKKPKKYRIFLKKVAERGGCSSKNLSGRDDLRTNFAPSQPFMMFKNVQQEYSQRVTRASIQPGLGGNTIPALGGSSFRNLHSPNQQAPSN NSILQSPYGQSRLFGNANSANQANQIRSGLESNYSIGENMPSYGGVIPNGLTHGTRPMQMYHPQNQARSYLQNFGSPPLINRFGAVGIQATNYGSGVGDI GIINNSLNTNNNYVGIRVTTDGRLIGSGQMQLNTNELSNGFSDGGHPCLMNWARNGNMNVASIGFNIASENYVARRGSFSAGFEGANQFFPPTPFTSVYH GNSTPMLLPPPPPQHQLGLGNGGQNDFVFGLMNNSPPILGGNSNQQPQIGEGEPNVSDMLLEPTNNPPAYQLPQGVAQMSTPLHELLTPDFLNSLHIDDN TPRNEQPSSQVQSGEGAMNPICGSDANSMDGYFPNFDQQNGNGDLVDSELNNPQPVDNGPTGNQASCKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYG ASNVAKMLQQLPAHLRAEAANSLYYEAQSRTQDPVYGCVGIISLLHQQIHGVESQLAKTKAEIAVLNSLAQEPAQIQENEVEASFNHFLLEQDNIASGQY FSHSTCIPSNFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.012G133800 [exp]	0	1	Pt-ARR13.1,PtRR17
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031000 [exp]	10.58	0.5426	NAC131
AT1G07050			CCT motif family protein (.1)		Potri.009G077100 [exp]	13.78	0.6424
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Potri.017G092700 [exp]	13.85	0.5492	ATEXPA21.1,PtEXPA27
					Potri.005G240601 [exp]	15.49	0.5529
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183300 [exp]	42.66	0.5432
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.004G128800 [exp]	67.23	0.3889
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.001G023200 [exp]	91.78	0.4585
					Potri.010G058050 [exp]	92.66	0.4585
					Potri.019G126901 [exp]	97.76	0.4585
					Potri.018G064450 [exp]	128.16	0.4479

Compare expression of checked genes

Potri.012G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.