Plant FIBer expression Database

Potri.012G133900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52030 426 / 8e-149 TraB family protein (.1.2)
AT1G05270 101 / 7e-24 TraB family protein (.1)
AT2G32340 89 / 2e-19 TraB family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G121900
[exp]
100 / 5e-23 AT1G05270 404 / 7e-140 TraB family protein (.1)
Potri.017G038500
[exp]
92 / 1e-20 AT1G05270 417 / 1e-146 TraB family protein (.1)
Potri.007G121800
[exp]
86 / 3e-18 AT1G05270 323 / 6e-109 TraB family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038884
[exp]
465 / 4e-164 AT5G52030 458 / 3e-161 TraB family protein (.1.2)
Lus10015005
[exp]
461 / 2e-156 AT5G52030 461 / 5e-156 TraB family protein (.1.2)
Lus10038420
[exp]
106 / 2e-25 AT1G05270 371 / 6e-127 TraB family protein (.1)
Lus10015104
[exp]
101 / 7e-24 AT1G05270 447 / 4e-158 TraB family protein (.1)
Lus10023387
[exp]
90 / 2e-19 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1)
Lus10031571
[exp]
77 / 2e-15 AT1G05270 368 / 3e-127 TraB family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0572 TIKI PF01963 TraB TraB family
Representative CDS sequence
>Potri.012G133900.1 pacid=42783764 polypeptide=Potri.012G133900.1.p locus=Potri.012G133900 ID=Potri.012G133900.1.v4.1 annot-version=v4.1
ATGGAAACTCTGCTAAAAATCCCATTCCCTATCTTCTCTAATAACCCACATATCCTCACAACAAAACCTACCAAACCCTTAAAGGTTTCAATCAAACCTC
CACCACCAGACTTTGATTTCAGGTCGGAGATTTTGCAGGAATCTAGAGCCACAATTTCAAGAACCTACCCTGAATTGCTTGACTTGGCTAATGATGGCAC
CTTGCTGTTGATTGAGAAGAAAATTTTTGGTCCTGTACCTTCCTGGAGGACTGAGTTTGTTGAGCCAGAAGCAATATGGTTGGTTGGGACTACTCATATT
TCTAGTCAATCTGCTGCTGAAGTGGAGAGAGTGGTCAGGGCTGTTAAGCCTGATAATGTTGTAGTTGAGCTATGTAGAAGCAGAGCTGGAATTATGTACA
TTTCCGATGAAGGTGAGGTTGGCCAACAGTTAAGATCAAGCATGTTCTCTTTGAGTGGCACTGGCTTTTTTGGAGCTGTCGGCCGTAGCATAAACTTGGG
AGGTCAAACAGCTTTAGCATTGCGTCTACTTTTGGCCCTTTTCTCATCAAAGATTTCTTCTGATGTCAACCGGCCTTTCGGAGATGAGTTCCGAGCTGCT
CGAAAAGTGGCTGAAGAAATCGGTGCTCAAATAGTCTTGGGGGACAGGCCAATTGAAATAACTCTTGAAAGGGCTTGGAATTCTCTGAAATGGAGGGAGA
AGCTGAGTTTAGTGATTGCAGTTGTTCGCGGAATTACCTCATCATCTGATATATCTAAGAACAATTTCAAGGCATCAAGCACAGATGATAGAACCTTTCA
GCTCTACGAGCAGCTCAGCTTTTCATATCCATCACTCCTGCAGCCTCTCATACACGAACGAGACACTTATCTTGCATGGTCTCTAAAACGAAGCAAAGCT
GTGAACAACGGCAAAAGAGTGGTGGGGGTGATAGGAAAAGGTCATATGAATGGTGTAATATATGCATTGATATCAGATCAGGGAAACCTGCGGTTTCGAG
ACCTCGCAGGAAGGAGGTCATCAGGCGATGATGGGTCTAATGGCTTTGTTGCTGGTCTTGTTAAGAGCTTGGTTAGAGACACTGCCATTGGCATTCTGCT
GTGGCAATTATATGAACAACTAAAAGGTTCACTATAG
AA sequence
>Potri.012G133900.1 pacid=42783764 polypeptide=Potri.012G133900.1.p locus=Potri.012G133900 ID=Potri.012G133900.1.v4.1 annot-version=v4.1
METLLKIPFPIFSNNPHILTTKPTKPLKVSIKPPPPDFDFRSEILQESRATISRTYPELLDLANDGTLLLIEKKIFGPVPSWRTEFVEPEAIWLVGTTHI
SSQSAAEVERVVRAVKPDNVVVELCRSRAGIMYISDEGEVGQQLRSSMFSLSGTGFFGAVGRSINLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAA
RKVAEEIGAQIVLGDRPIEITLERAWNSLKWREKLSLVIAVVRGITSSSDISKNNFKASSTDDRTFQLYEQLSFSYPSLLQPLIHERDTYLAWSLKRSKA
VNNGKRVVGVIGKGHMNGVIYALISDQGNLRFRDLAGRRSSGDDGSNGFVAGLVKSLVRDTAIGILLWQLYEQLKGSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52030 TraB family protein (.1.2) Potri.012G133900
[exp]
0 1
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.006G183900
[exp]
2.23 0.9804
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Potri.001G416400
[exp]
2.82 0.9763
AT1G01970 Tetratricopeptide repeat (TPR)... Potri.014G070500
[exp]
3.00 0.9642
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Potri.016G036200
[exp]
6.24 0.9605
AT1G20810 FKBP-like peptidyl-prolyl cis-... Potri.005G254900
[exp]
6.92 0.9753
AT2G23560 ATMES7 ARABIDOPSIS THALIANA METHYL ES... Potri.007G036800
[exp]
7.21 0.9713
AT1G60000 RNA-binding (RRM/RBD/RNP motif... Potri.008G172100
[exp]
8.94 0.9700 RNP1.2
AT3G48000 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, ald... Potri.015G074100
[exp]
9.94 0.9515 Pt-ALDH1.3
AT5G61490 Uncharacterised conserved prot... Potri.014G057200
[exp]
11.66 0.9506
AT2G47910 CRR6 chlororespiratory reduction 6 ... Potri.006G060100
[exp]
12.12 0.9690

Potri.012G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.