Plant FIBer expression Database

Potri.012G134200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06010 63 / 5e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G136500
[exp]
79 / 2e-21 AT1G06010 69 / 2e-17 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026833
[exp]
66 / 4e-14 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence
>Potri.012G134200.1 pacid=42783925 polypeptide=Potri.012G134200.1.p locus=Potri.012G134200 ID=Potri.012G134200.1.v4.1 annot-version=v4.1
ATGACGAGAGAGACGAGTCCAGGCTTGAAGATCCTTTGGGCATGGACCATTGGCACCGCCGCCATTTTGGTTACAAGTGTGGTGAGGACTAGACTAAAGG
ACATGGAGCAGATGATGAACGCTGAGCAACAGCAGCAGCAAGAGCAAGAAAAACAGCATCAAAGCACTCTGAGTGATGCAGCTTTGTTGGATTCTGACGA
GGGAATCATTCGAGAAGTGAGATCATAG
AA sequence
>Potri.012G134200.1 pacid=42783925 polypeptide=Potri.012G134200.1.p locus=Potri.012G134200 ID=Potri.012G134200.1.v4.1 annot-version=v4.1
MTRETSPGLKILWAWTIGTAAILVTSVVRTRLKDMEQMMNAEQQQQQEQEKQHQSTLSDAALLDSDEGIIREVRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06010 unknown protein Potri.012G134200
[exp]
0 1
AT2G35605 SWIB/MDM2 domain superfamily p... Potri.005G078400
[exp]
2.82 0.8012
AT1G10865 unknown protein Potri.008G010300
[exp]
3.60 0.7310
AT1G57540 unknown protein Potri.005G002900
[exp]
7.07 0.7878
AT2G27960 CKS1AT, CKS1 cyclin-dependent kinase-subuni... Potri.009G004000
[exp]
8.12 0.7364
AT2G18400 ribosomal protein L6 family pr... Potri.007G024900
[exp]
8.71 0.7749
AT4G30330 Small nuclear ribonucleoprotei... Potri.006G174000
[exp]
9.48 0.7550
AT3G59650 mitochondrial ribosomal protei... Potri.013G126200
[exp]
10.95 0.7797
AT5G64140 RPS28 ribosomal protein S28 (.1) Potri.010G245400
[exp]
15.49 0.7730 Pt-RPS28.1
AT2G20060 Ribosomal protein L4/L1 family... Potri.004G004800
[exp]
16.15 0.7382
AT1G65000 unknown protein Potri.013G078866
[exp]
19.07 0.7506

Potri.012G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.