Plant FIBer expression Database

Potri.012G134250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G226700
[exp]
37 / 0.001 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G134250.1 pacid=42784364 polypeptide=Potri.012G134250.1.p locus=Potri.012G134250 ID=Potri.012G134250.1.v4.1 annot-version=v4.1
ATGACCTCTCCCTTTTTGAGCCTCAAGAAAGCATGCAAAGCTTTTGCATTTGCTCAAGATTTGTGGCTTCAACAACTGAACTCTTCTGCAGTTCCATCAG
TATCCTCATTCCTCAATCGCTCTCCTTTCCACCCATCGCACAGATCATTCACAAATATAAAGCCTGTTATCTTCTCTTCAGATAGTGCAGCACCAGGACC
TTCTTATTGGATTTCTATGAATGCAATCTTTGTTGACGAAGCAGCTTCCTCGTCAAATAAAGTGAGTCTGGCAAGTATTTTTAGCAGCTTCAAGAATTTC
ATCATTAAATCCTACGGGATAAAAGGGTGTGTATCTTTCTACAGAATTTGA
AA sequence
>Potri.012G134250.1 pacid=42784364 polypeptide=Potri.012G134250.1.p locus=Potri.012G134250 ID=Potri.012G134250.1.v4.1 annot-version=v4.1
MTSPFLSLKKACKAFAFAQDLWLQQLNSSAVPSVSSFLNRSPFHPSHRSFTNIKPVIFSSDSAAPGPSYWISMNAIFVDEAASSSNKVSLASIFSSFKNF
IIKSYGIKGCVSFYRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G134250
[exp]
0 1
AT4G16740 ATTPS03 terpene synthase 03 (.1.2) Potri.019G023018
[exp]
6.92 0.6544
AT1G29720 Leucine-rich repeat transmembr... Potri.011G072641
[exp]
12.96 0.6424
AT5G17050 UGT78D2 UDP-glucosyl transferase 78D2 ... Potri.013G118700
[exp]
20.00 0.6182
AT4G22880 TT18, TDS4, ANS... TANNIN DEFICIENT SEED 4, ANTHO... Potri.001G113100
[exp]
22.38 0.6318 Pt-ANS.1
AT1G64320 myosin heavy chain-related (.1... Potri.003G137300
[exp]
23.32 0.6269
Potri.003G189601
[exp]
37.66 0.5988
AT5G17220 GST26, TT19, AT... TRANSPARENT TESTA 19, GLUTATHI... Potri.017G138800
[exp]
38.88 0.6061 ATGSTF10.1
Potri.006G077750
[exp]
45.89 0.5756
AT1G65480 FT FLOWERING LOCUS T, PEBP (phosp... Potri.010G179900
[exp]
48.66 0.5846
AT1G66370 MYB ATMYB113 myb domain protein 113 (.1) Potri.017G125600
[exp]
51.38 0.6043

Potri.012G134250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.