Plant FIBer expression Database

Potri.012G134300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16560 469 / 3e-167 Per1-like family protein (.1.2.3.4)
AT5G62130 434 / 4e-153 Per1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G136600
[exp]
599 / 0 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4)
Potri.007G065800
[exp]
516 / 0 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4)
Potri.002G177300
[exp]
61 / 8e-12 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015006
[exp]
493 / 1e-176 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4)
Lus10038885
[exp]
486 / 9e-174 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4)
Lus10031187
[exp]
455 / 2e-161 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4)
Lus10031765
[exp]
460 / 3e-157 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Lus10027411
[exp]
443 / 8e-157 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4)
Lus10031658
[exp]
379 / 3e-131 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF04080 Per1 Per1-like family
Representative CDS sequence
>Potri.012G134300.2 pacid=42783537 polypeptide=Potri.012G134300.2.p locus=Potri.012G134300 ID=Potri.012G134300.2.v4.1 annot-version=v4.1
ATGACTCAGATGGCTCGTTGGTCGTTTCATGGGATTCTGGCTTTTGTTTCGCTTCTAGTCTTCTTAACGCATGGGGTTTACGCGAGTGATGGTGATGCTG
ATCCGATTTACAAGGCTTGTGTGGAGCAGTGTGAGAAAACTGGATGTGTAGGGGAAAAATGCTTCCAACACTGTAAATTCTCGTCTGATGGGAAGCCAGT
GGGTGGGCCATGGTATCTACAAGAGCCACTGTATCTGCAGTGGAAACAATGGGACTGTCGTAGTGACTGCCAATACCATTGCATGCTTGTCAGAGAGGAA
GAGAGAGAGAAACTCGGTGGCAAGCCTGTCAAGTATCATGGGAAATGGCCATTTCACCGTGCTTATGGCTTTCAGGAACCTGTTTCTGTTGCTCTCTCTG
CACTCAATCTTGCCATTCAGTTTCATGGTTGGGTATCCTTTTTCATCCTAATATACTATAAGTTGCAACTGACACCAAGTAAGAAGACTTACTATGAATA
TACTGGCTTGTGGCACATCTATGGAATCCTATCGATGAACTCGTGGTTCTGGAGTGCTGTTTTCCACAGTCGAGATGTTGAGTTGACCGAGAAACTAGAT
TGTTCATCTGCTGTGGCATTACTAGGGTTTTCCCTTATTCTAGCAATACTACGAGCTTTCAGCATGAGAGATGAGGCTGCCAGGGTCATGGTCTCTGCTC
CAATAATTGCATTTGTTACTACACATATCTTATATCTGAACTTCTACAACCTGGATTACGATCTAAACATGAAAGTTTGTGTGGCCATGGGTGTAGCTCA
ACTTCTCATTTGGGCAGTCTGGGCCGGTGTAACTAACCACCCATCCCGGCTCAAGTTGTGGGTGGCAGTTGTTGGAGGCGGCCTTGCCATCCTGTTGGAA
ATATACGACTTCCCGCCTTACCAGGGATTTGTGGATGCTCATGCTCTCTGGCATGCCACTACCATCCCACTCACATATCTTTGGTGGAGCTTTGTGAAGG
ATGATGCTGAGTTTAGAACATCAAGTCTCCTCAAGAAAGCAAGGTAG
AA sequence
>Potri.012G134300.2 pacid=42783537 polypeptide=Potri.012G134300.2.p locus=Potri.012G134300 ID=Potri.012G134300.2.v4.1 annot-version=v4.1
MTQMARWSFHGILAFVSLLVFLTHGVYASDGDADPIYKACVEQCEKTGCVGEKCFQHCKFSSDGKPVGGPWYLQEPLYLQWKQWDCRSDCQYHCMLVREE
EREKLGGKPVKYHGKWPFHRAYGFQEPVSVALSALNLAIQFHGWVSFFILIYYKLQLTPSKKTYYEYTGLWHIYGILSMNSWFWSAVFHSRDVELTEKLD
CSSAVALLGFSLILAILRAFSMRDEAARVMVSAPIIAFVTTHILYLNFYNLDYDLNMKVCVAMGVAQLLIWAVWAGVTNHPSRLKLWVAVVGGGLAILLE
IYDFPPYQGFVDAHALWHATTIPLTYLWWSFVKDDAEFRTSSLLKKAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16560 Per1-like family protein (.1.2... Potri.012G134300
[exp]
0 1
AT1G26670 VTI1B, ATVTI12,... VESICAL TRANSPORT V-SNARE 12, ... Potri.008G091000
[exp]
4.00 0.7663 Pt-VTI12.1
AT3G02100 UDP-Glycosyltransferase superf... Potri.013G022800
[exp]
4.12 0.8165
AT5G53530 VPS26A vacuolar protein sorting 26A (... Potri.009G021200
[exp]
18.22 0.7855
AT1G52140 unknown protein Potri.018G046500
[exp]
67.52 0.7604
AT1G77700 Pathogenesis-related thaumatin... Potri.003G020100
[exp]
75.47 0.7137
AT5G10560 Glycosyl hydrolase family prot... Potri.001G089100
[exp]
90.52 0.7186
AT5G14220 HEMG2, MEE61, P... MATERNAL EFFECT EMBRYO ARREST ... Potri.001G333500
[exp]
96.07 0.7434
AT4G12680 unknown protein Potri.007G035400
[exp]
102.82 0.7259
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Potri.019G029500
[exp]
113.46 0.7227
AT1G07380 Neutral/alkaline non-lysosomal... Potri.009G040600
[exp]
115.09 0.6991

Potri.012G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.