Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDPK5.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12580 569 / 0 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT2G17290 306 / 2e-97 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT5G19360 303 / 1e-96 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 301 / 4e-96 CPK17 calcium-dependent protein kinase 17 (.1) AT4G38230 300 / 6e-96 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT3G10660 303 / 2e-95 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 301 / 3e-95 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 297 / 1e-93 CPK20 calcium-dependent protein kinase 20 (.1) AT2G35890 295 / 1e-93 CPK25 calcium-dependent protein kinase 25 (.1) AT4G35310 293 / 1e-92 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G136900 [exp] 933 / 0 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.003G120800 [exp] 614 / 0 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.016G066700 [exp] 310 / 2e-98 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.008G014700 [exp] 308 / 6e-98 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 306 / 2e-97 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.006G199400 [exp] 305 / 1e-96 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.009G168600 [exp] 304 / 1e-96 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.013G112500 [exp] 303 / 1e-96 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.010G244800 [exp] 304 / 2e-96 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015009 [exp] 658 / 0 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 650 / 0 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 304 / 1e-97 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 305 / 1e-96 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10001384 [exp] 304 / 2e-96 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10017537 [exp] 299 / 6e-96 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10000889 [exp] 301 / 8e-96 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10026559 [exp] 301 / 1e-95 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10036050 [exp] 300 / 1e-95 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10013842 [exp] 300 / 2e-95 AT2G17290 948 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.012G134600.3 pacid=42782955 polypeptide=Potri.012G134600.3.p locus=Potri.012G134600 ID=Potri.012G134600.3.v4.1 annot-version=v4.1 ATGGCTGTTGGCAAGAGCAACAGCAGCCATGAACCCTTGAAGCAACCCTGCAATTGTTATAGAGTTTCAAGCTTGATTGAAAGCATTTTGGACACAGACC AGACCTCTAATCTGAAAGATAGGTATGTTCTCGGAGAACAATTAGGTTGGGGTCAGTTTGGTGTTATTAGAGTGTGCACTGATAAGTTGACTGGAGAGGT ACTGGCATGCAAATCGATTTCTAAGGATAGGCTGGTGACATCTGATGATGCAAGGAGTGTCAAGCTGGAGATTGAAATAATGACCAGGTTATCAGGGCAT GATAATGTTGTGGATCTCAAGGCAGTTTATGAGGATGAAAATTATGTTCACTTGGTAATGGAACTTTGTGCCGGAGGGGAGCTTTTTCAACAGTTAGAAA AACATGGCCGTTTCTCTGAGGCTGAGGCTAGGGATCTCTTCAAGCATCTTATGCAAGTGGTTCAATATTGTCATGAAAATGGAGTGGTTCACAGGGATTT GAAGCCAGAGAATATCCTTTTAGCTTCAAAATCCTCATCATCACCGATAAAATTGGCAGATTTTGGCCTTGCAACCTATGTCAAGCCTGGTCAGAGTTTG CGTGGGACTGTCGGGAGCCCATTTTATATAGCTCCTGAGGTATTGGCAGGAGGCTATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTGATTCTCTATA TTCTTCTTAGTGGGATGCCACCATTTTGGGGTAAGACCAAGTCAAGGATATTTGATGCTGTGAGGGCAGCTGATTTGAGGTTTCCTTCAAATCCTTGGGA TCACATAACTCAATCTGCGAAGGAGTTGGTCAGGGGTATGCTCTGCACAGATCCCTCACAAAGGTTTACTGCTCAGCAGGTTTTAGATAATTCCTGGATG AAGTATGATTTACCATATCCTGAAGAACCTAGTCAACGTGAAAAGCAAAGTTGTCAAGAATGGGGTTTAGGTGGTGGCTCATTCTCCACATTGATGGCCA GGGATCAGGATGTCAGCTTTGGCACTGGATCACCCATCTTTCATGATGTTCAGTCTTCTACTTTTAAATGCAGATCGTCATTCTCTTCTTTCCTAGCGGA GCCATCAACACCTATATTTGCACCTGGAGGATTTTCTTTTCACAATGGTGATGATTCAAATGCCTTGGAATTCATGTCCCCTGTATCCTCAATGCCGAGC TTTGCGTTCTCCAGTGCTGGTCCTGTAATTGAGCTAGGGAGTTCCACATTAGAATTATCTAGTAACATTTCTCGGATAGATTCAGTTTGTGGAGGTAATC AACTTTCAGAGATAAGCTTGGGGAAGATGCTTCTGTTGCCTGAGCCTTCTCTATGCTGTGGATGTGAAGCTAGAGAAATGGAAAACAGCCCAGTTGAAGT TAAGAGAGCAGGAGCAGAAATTGGGTCCAGGGCATTGGGAATACACGGTAAGAGGAACCGGACAATTGGTCTCGGTGAGTGCGAGCAACTTGATCTCATG GTGACTGAATCAGTCATCCGCTGGGCATCCTGCACCCATCTTCCAACTGCTCCATCCCTAAGGTCCTCTCTTGTCTGTTGA
AA sequence Show only first row Show all	>Potri.012G134600.3 pacid=42782955 polypeptide=Potri.012G134600.3.p locus=Potri.012G134600 ID=Potri.012G134600.3.v4.1 annot-version=v4.1 MAVGKSNSSHEPLKQPCNCYRVSSLIESILDTDQTSNLKDRYVLGEQLGWGQFGVIRVCTDKLTGEVLACKSISKDRLVTSDDARSVKLEIEIMTRLSGH DNVVDLKAVYEDENYVHLVMELCAGGELFQQLEKHGRFSEAEARDLFKHLMQVVQYCHENGVVHRDLKPENILLASKSSSSPIKLADFGLATYVKPGQSL RGTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFDAVRAADLRFPSNPWDHITQSAKELVRGMLCTDPSQRFTAQQVLDNSWM KYDLPYPEEPSQREKQSCQEWGLGGGSFSTLMARDQDVSFGTGSPIFHDVQSSTFKCRSSFSSFLAEPSTPIFAPGGFSFHNGDDSNALEFMSPVSSMPS FAFSSAGPVIELGSSTLELSSNISRIDSVCGGNQLSEISLGKMLLLPEPSLCCGCEAREMENSPVEVKRAGAEIGSRALGIHGKRNRTIGLGECEQLDLM VTESVIRWASCTHLPTAPSLRSSLVC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	0	1	Pt-CDPK5.3
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	1.00	0.9013
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	2.82	0.8614
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	4.00	0.8919
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	4.58	0.8723
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.015G136900 [exp]	6.70	0.8344
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.003G222700 [exp]	7.48	0.8386
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.010G025200 [exp]	8.06	0.8285
AT5G53220			unknown protein		Potri.015G022500 [exp]	8.24	0.8226
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	8.83	0.8400
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	10.24	0.8406

Compare expression of checked genes

Potri.012G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.