Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43050 212 / 1e-71 NPQ6 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1) AT1G65420 47 / 7e-07 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) AT3G56830 43 / 2e-05 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076900 [exp] 52 / 2e-08 AT1G65420 229 / 2e-76 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Potri.002G146000 [exp] 42 / 5e-05 AT3G56830 171 / 3e-53 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038888 [exp] 209 / 3e-70 AT5G43050 197 / 1e-65 NONPHOTOCHEMICAL QUENCHING 6, Protein of unknown function (DUF565) (.1) Lus10039937 [exp] 41 / 8e-05 AT1G65420 200 / 3e-66 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Lus10027674 [exp] 39 / 0.0005 AT1G65420 195 / 2e-63 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04483 [poplar] [flax] DUF565 Protein of unknown function (DUF565)
Representative CDS sequence Show only first row Show all	>Potri.012G134700.1 pacid=42783968 polypeptide=Potri.012G134700.1.p locus=Potri.012G134700 ID=Potri.012G134700.1.v4.1 annot-version=v4.1 ATGGCACAGTCTGTGAGTTTGATCACTACGTGCCCCCTCAAATTGGGGTTTGCTCCTCAGAGAAGAGTTTCCAGTGTAAAATATGGAACTTCTGTTTTCA GATCCTCAACCGGCCGCCTCAGGATCCGAGCTGTGCAAGAGAATGAAGGGCCTCGAAGGCTAATTGATATCATCAGAACCATTCCCGAGCTCTCGAGGAA CTATTTTCGTAGGCCATCAAGGAGGGCTCTCTTTGGGGGAATTTCCTTGTTAGGTGGCTTTTATGTGGCACAAACAATTTCTCTGTCATTTGGAGCATTA GGAGTAAATGATGTGATCGCTGCTGTGGTATGTGTTTTATTAACGGAGTATGTGACCAGGTTTTATTACAGCCGGCCGAAGGTAACCTTCCCCATTGCTC TTCTCAACAATTTCAAGATGGGATTCACTTATGGCCTCTTCATTGATGCTTTCAAGCTTGCTAGTTAA
AA sequence Show only first row Show all	>Potri.012G134700.1 pacid=42783968 polypeptide=Potri.012G134700.1.p locus=Potri.012G134700 ID=Potri.012G134700.1.v4.1 annot-version=v4.1 MAQSVSLITTCPLKLGFAPQRRVSSVKYGTSVFRSSTGRLRIRAVQENEGPRRLIDIIRTIPELSRNYFRRPSRRALFGGISLLGGFYVAQTISLSFGAL GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Potri.012G134700 [exp]	0	1
AT4G09620			Mitochondrial transcription te...		Potri.013G113500 [exp]	3.46	0.9509
AT2G20920			Protein of unknown function (D...		Potri.004G177300 [exp]	3.46	0.9568
AT4G29070			Phospholipase A2 family protei...		Potri.001G275300 [exp]	5.65	0.9502
AT3G53220			Thioredoxin superfamily protei...		Potri.006G123100 [exp]	11.61	0.9212
AT4G13220			unknown protein		Potri.002G251800 [exp]	13.56	0.9556
AT3G45050			unknown protein		Potri.009G008400 [exp]	14.07	0.9398
AT4G21445			unknown protein		Potri.004G033400 [exp]	15.39	0.9545
AT1G52220			unknown protein		Potri.001G184700 [exp]	19.62	0.9508
AT1G22850			SNARE associated Golgi protein...		Potri.019G071900 [exp]	20.68	0.9536
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	23.02	0.9493

Compare expression of checked genes

Potri.012G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.