Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 601 / 0 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 585 / 0 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G40880 347 / 1e-115 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT5G49200 337 / 2e-112 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT3G49660 70 / 5e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 70 / 1e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 69 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 67 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 64 / 6e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT4G32990 62 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137200 [exp] 746 / 0 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 384 / 3e-129 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G239600 [exp] 72 / 2e-13 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 67 / 5e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 66 / 8e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 67 / 9e-12 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 67 / 1e-11 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 67 / 1e-11 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G079600 [exp] 66 / 2e-11 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038890 [exp] 567 / 0 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032066 [exp] 334 / 4e-111 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021656 [exp] 333 / 7e-110 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 300 / 6e-97 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021648 [exp] 295 / 4e-95 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10014595 [exp] 271 / 4e-83 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10032062 [exp] 209 / 1e-63 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 206 / 2e-62 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001652 [exp] 193 / 3e-59 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 167 / 3e-49 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.012G134800.1 pacid=42783726 polypeptide=Potri.012G134800.1.p locus=Potri.012G134800 ID=Potri.012G134800.1.v4.1 annot-version=v4.1 ATGGATTTGGACTATAACGGAGGCAACACCACCAACACAAACAAGCGAGTTTTTCACAGATTAGGAGGCGGGAAATCAGTGAACGACACGTCAAATCAGC ATAACCATCAGCATCAGCAGAATCAGAAGGTCTGTTACCACTGGAGAGCTGGAAAGTGCAATAGATTCCCATGTCCATTTCTCCACCGTGAACTTCCAGC ACCGCCGCCGCATGCGTCTGTGAACGGGGGAGGAGGAGGAGGAGGAGGAGCGAAGAGAGGGTTTGCGGGAAATGATTCGTCCTCGTTTTCAGGGAGGAGG GGTGGTAATAGTAATTATAGTAATAGTTGGGGGCGATTTGGAAATAAAGGTGATGTTAGAGGGGTGAAAAGGGTAAGTGTGGAGAAAGTGTGTAATTTTT GGGTACAAGGGAATTGTAGTTTTGGTGATAAGTGTAGGTATTTGCATTCTTGGAGTTTAGGTGATGGGTTTTCTTTGGTGACTCAACTTGAAGGGCATCA AAAGGTGATTAGTGGGATTGCATTACCATCTGGGTCTGATAAGCTGTATACAGGGAGTAAAGATGAGACTGTTAGAGTTTGGGATTGCCAGTCTGGACAG TGTACGGGTGTGGTTAATCTTGGTGGTGAGGTTGGTTGCATGATTAGTGAAGGTCCTTGGATTTTTGTTGGCCTTCCAAATGTTGTCAAGGCGTGGAATA CACAAACTAACGCTGACCTAAGTCTTAATGGGCCTATTGGACAAGTGTATGCTCTGGTTGTGGGCAATGATTTGTTATTTGCTGGTACGCAGGATGGGTC AATATTGGTATGGAAATTCAATGCAGCTACCTACAACTTTGAACCAGCTGTATCACTAAAGGATCACAAAATGGCCGTTGTTTCATTAGTTGTCGGAGCT AATAGACTCTACTCTGGCTCTATGGACCATTCTATAAAAGTCTGGAGCCTTGAAACTTTGCAATGTATACAGACGCTGACAGATCATACTTCAGTGGTCA TGTCGCTACTATGCTGGGAACAGTTTCTTCTATCATGCTCGTTGGACCAAACAATAAAGGTGTGGGCTGCTACAGAAAGTGGAAACTTAGAAGTAACATT CACTCACAACGAAGAACATGGCCTGCTTACCCTTTGTGGGATGCATGATCCGGAAGGCAAGCCAGTCTTGCTATGCTCCAGTAATGACAATTCAGTCCAC CTCTATGATTTACCATCGTTCTCGGAAAAGGGCAAAATGTTTGCCAAACAAGAGATCCGTGCCATTCAAACTGGTCCTGGGGGCCTATTTTTCACTGGCG ATGGCACTGGTCAAGTGAGAGTGTGGAATTCTGTCGCTGTACCAACTACCACAACTTGA
AA sequence Show only first row Show all	>Potri.012G134800.1 pacid=42783726 polypeptide=Potri.012G134800.1.p locus=Potri.012G134800 ID=Potri.012G134800.1.v4.1 annot-version=v4.1 MDLDYNGGNTTNTNKRVFHRLGGGKSVNDTSNQHNHQHQQNQKVCYHWRAGKCNRFPCPFLHRELPAPPPHASVNGGGGGGGGAKRGFAGNDSSSFSGRR GGNSNYSNSWGRFGNKGDVRGVKRVSVEKVCNFWVQGNCSFGDKCRYLHSWSLGDGFSLVTQLEGHQKVISGIALPSGSDKLYTGSKDETVRVWDCQSGQ CTGVVNLGGEVGCMISEGPWIFVGLPNVVKAWNTQTNADLSLNGPIGQVYALVVGNDLLFAGTQDGSILVWKFNAATYNFEPAVSLKDHKMAVVSLVVGA NRLYSGSMDHSIKVWSLETLQCIQTLTDHTSVVMSLLCWEQFLLSCSLDQTIKVWAATESGNLEVTFTHNEEHGLLTLCGMHDPEGKPVLLCSSNDNSVH LYDLPSFSEKGKMFAKQEIRAIQTGPGGLFFTGDGTGQVRVWNSVAVPTTTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.012G134800 [exp]	0	1
					Potri.015G138050 [exp]	2.44	0.8469
AT2G46900			unknown protein		Potri.014G109500 [exp]	5.47	0.7579
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107600 [exp]	7.07	0.7618	2OGox7
AT5G08240			unknown protein		Potri.001G408900 [exp]	11.40	0.6983
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.015G137200 [exp]	16.00	0.6989
AT4G03000			RING/U-box superfamily protein...		Potri.008G198300 [exp]	16.97	0.7598
					Potri.004G012000 [exp]	20.14	0.7764
					Potri.008G139375 [exp]	20.49	0.7706
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	21.00	0.7633
AT2G14095			unknown protein		Potri.017G050000 [exp]	23.68	0.7723

Compare expression of checked genes

Potri.012G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.