Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51970 558 / 0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G63620 102 / 5e-24 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G43940 94 / 2e-21 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 87 / 9e-19 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 86 / 3e-18 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 85 / 6e-18 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 80 / 3e-16 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 79 / 3e-16 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT4G37980 76 / 2e-15 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G39330 74 / 1e-14 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134900 [exp] 574 / 0 AT5G51970 651 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 92 / 2e-20 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G254900 [exp] 88 / 4e-19 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.T010600 [exp] 88 / 5e-19 AT5G63620 646 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 87 / 5e-19 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 87 / 7e-19 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.006G199100 [exp] 84 / 1e-17 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.004G067000 [exp] 84 / 1e-17 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.004G138700 [exp] 83 / 3e-17 AT5G63620 644 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031660 [exp] 613 / 0 AT5G51970 582 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10027409 [exp] 598 / 0 AT5G51970 567 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10027410 [exp] 541 / 0 AT5G51970 613 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10031659 [exp] 535 / 0 AT5G51970 622 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10039625 [exp] 89 / 4e-19 AT5G63620 655 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10029549 [exp] 86 / 3e-18 AT5G63620 653 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) Lus10003854 [exp] 79 / 3e-16 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10029759 [exp] 79 / 7e-16 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 79 / 8e-16 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10002089 [exp] 78 / 1e-15 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.012G135000.1 pacid=42782743 polypeptide=Potri.012G135000.1.p locus=Potri.012G135000 ID=Potri.012G135000.1.v4.1 annot-version=v4.1 ATGGCACATGGTGGTGGTGCTGCTGCTGATGTTATGGCATGCAAACAAGAAGAAGAAGAAGAAGTAGAGAACAAGGCTGCTTGGCTTCTTGGGATCAAAA CCCTAAAGATTCAGCCTTACCATCTTCCTCCTCTTGGTCCTCTTGATGTTAAAGTAAGGATCAAAGCACTTGGTATATGTGGAAGTGATGTTCATCACTT CAAGACAATGAGATGTGCAAGCTTTGTTGTCAAGAAGCCAATGGTTATAGGACATGAATGTGCTGGGATCATAGAAGACGTTGGGAGTGAAGTGAAGTCT CTAGCTGTTGGTGATCGAGTAGCATTGGAACCTGGAATCAGTTGCCGAAGATGCAATCTTTGCAAAGAAGGTCGCTACAATTTATGTCCAGAGATGAAGT TCTTTGGTTCTCCACCAACCAATGGCTCTCTAGCTAACAAGGTAGTGCATCCTGCGAATCTTTGTTTCAAACTACCAGACAATGTGAGCCTGGAGGAAGG AGCTATGTGTGAGCCCCTCAGTGTTGGTGTCCATGCCTGTCGCCGTGCACAAATTGGTCCTGAGACAAATGTATTGATCATGGGAGCAGGACCAATAGGC CTCATCACTTTGCTTGCTTCTCGTGCATTTGGCGCCCCTAGAGTGGTGATTGTTGACGTTGATGATCGCCGTTTATCCATTGCAAAGAATCTTGGTGCAG ATGAGATCATTCATGTCTCAACAAATATTCAGGATGTCGATGAAGAGGTAATAAAGATACAAAATGCTATGGGTTCAGGAATTGATGTGAGCTTTGATTG TGTTGGATACAACAAAACCATGACTACAGCCCTGAATGCCACTCAATCAGGTGGTAAAGTTTGCCTTATTGGTTTGGCCCTGACTGAGATGACTGTCCCT CTTACCCCATCAGCTGCAAGGGAGGTGGATGTTATTGGCATATTCCGGTACAGGAACACATGGCCGCTCTGTATTGAATTCTTGAAAACCGGCAAGATTG ATGTTAAGCCTTTGATAACTCACAGATTTAGGTTCTCACAAGAGGAGGTAGAACAAGCCTTTGAGACTAGTGCTGGTGGTGGCAATGCCATTAAGGTCAT GTTTAACCTGTAA
AA sequence Show only first row Show all	>Potri.012G135000.1 pacid=42782743 polypeptide=Potri.012G135000.1.p locus=Potri.012G135000 ID=Potri.012G135000.1.v4.1 annot-version=v4.1 MAHGGGAAADVMACKQEEEEEVENKAAWLLGIKTLKIQPYHLPPLGPLDVKVRIKALGICGSDVHHFKTMRCASFVVKKPMVIGHECAGIIEDVGSEVKS LAVGDRVALEPGISCRRCNLCKEGRYNLCPEMKFFGSPPTNGSLANKVVHPANLCFKLPDNVSLEEGAMCEPLSVGVHACRRAQIGPETNVLIMGAGPIG LITLLASRAFGAPRVVIVDVDDRRLSIAKNLGADEIIHVSTNIQDVDEEVIKIQNAMGSGIDVSFDCVGYNKTMTTALNATQSGGKVCLIGLALTEMTVP LTPSAAREVDVIGIFRYRNTWPLCIEFLKTGKIDVKPLITHRFRFSQEEVEQAFETSAGGGNAIKVMFNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G135000 [exp]	0	1
					Potri.010G132101 [exp]	3.31	0.9152
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Potri.013G134400 [exp]	7.74	0.9055
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	8.00	0.8766
					Potri.014G030600 [exp]	8.94	0.8967
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	10.95	0.8978
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	13.19	0.9004
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	13.49	0.9063	DHQD3
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	16.09	0.9000
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	17.02	0.9020
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	18.97	0.8968

Compare expression of checked genes

Potri.012G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.