Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25433 109 / 2e-32 peptidoglycan-binding LysM domain-containing protein (.1) AT5G62150 102 / 2e-29 peptidoglycan-binding LysM domain-containing protein (.1) AT3G52790 94 / 6e-26 peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G137500 [exp] 178 / 2e-59 AT4G25433 113 / 7e-34 peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G077900 [exp] 143 / 2e-45 AT4G25433 108 / 7e-32 peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G152600 [exp] 129 / 5e-40 AT5G62150 100 / 1e-28 peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G231000 [exp] 100 / 1e-28 AT3G52790 119 / 3e-36 peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G030200 [exp] 99 / 3e-28 AT3G52790 114 / 1e-34 peptidoglycan-binding LysM domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027407 [exp] 134 / 8e-42 AT3G52790 115 / 2e-34 peptidoglycan-binding LysM domain-containing protein (.1) Lus10031662 [exp] 132 / 4e-41 AT3G52790 112 / 4e-33 peptidoglycan-binding LysM domain-containing protein (.1) Lus10015011 [exp] 99 / 4e-28 AT5G62150 107 / 5e-32 peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.012G135100.2 pacid=42783010 polypeptide=Potri.012G135100.2.p locus=Potri.012G135100 ID=Potri.012G135100.2.v4.1 annot-version=v4.1 ATGGACTTCTCTTCTTCAAAGAAAACCATGAGAATTTCATTAGCAGTAGCTGATGCAGCATCATGTTACTGTGCTATGGTCCTATTAGGCCTAATATTAT TGGGGTCTATTAGGGAGAGTTCTATGACAGAGGAGCCTGTCAAGGGGAGCCACTTTTTTGACAGACCCTGTGATGAAATATATGTTGTCGGAGAAGGAGA GACCCTCAACACCATCAGTGAAAAGTGCGACGACCCGTTTATAGTGGAGCAGAACCCGCATATCCATGACCCAGATGATGTTTATCCTGGACTTGTTATC AAGATCACCAGTTCAAAGTCAAGGAAGATGATGAAGAGGTAG
AA sequence Show only first row Show all	>Potri.012G135100.2 pacid=42783010 polypeptide=Potri.012G135100.2.p locus=Potri.012G135100 ID=Potri.012G135100.2.v4.1 annot-version=v4.1 MDFSSSKKTMRISLAVADAASCYCAMVLLGLILLGSIRESSMTEEPVKGSHFFDRPCDEIYVVGEGETLNTISEKCDDPFIVEQNPHIHDPDDVYPGLVI KITSSKSRKMMKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.004G049300 [exp]	2.00	0.8891
AT5G20260			Exostosin family protein (.1)		Potri.018G124945 [exp]	2.82	0.8840
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.003G188500 [exp]	5.47	0.8781	Pt-4CL.4
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	6.00	0.8459
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	7.21	0.8194
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087400 [exp]	9.79	0.8617	Pt-CYSP2.1
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.012G080000 [exp]	11.40	0.8450
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	12.04	0.8145
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	12.64	0.8465
AT2G03360			Glycosyltransferase family 61 ...		Potri.008G092700 [exp]	12.96	0.8483

Compare expression of checked genes

Potri.012G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.