Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38010 671 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G08070 436 / 1e-144 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 421 / 1e-139 SLO1 SLOW GROWTH 1 (.1) AT4G14820 418 / 1e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31430 409 / 2e-136 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G26782 389 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 384 / 2e-124 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 380 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G50270 380 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 374 / 6e-121 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138000 [exp] 616 / 0 AT4G38010 419 / 2e-143 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G103600 [exp] 457 / 5e-154 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 446 / 2e-149 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 447 / 3e-149 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 437 / 2e-145 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 432 / 5e-143 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 431 / 1e-142 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 424 / 7e-141 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.010G086200 [exp] 422 / 2e-139 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033026 [exp] 427 / 5e-141 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 424 / 1e-140 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 414 / 1e-137 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 407 / 1e-134 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 406 / 2e-134 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010320 [exp] 405 / 2e-134 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040680 [exp] 407 / 2e-133 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 406 / 3e-133 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 400 / 2e-132 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 398 / 6e-130 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G135600.1 pacid=42783469 polypeptide=Potri.012G135600.1.p locus=Potri.012G135600 ID=Potri.012G135600.1.v4.1 annot-version=v4.1 ATGAGCAAGATTAAGCATTCTCTGAAACGGGTTCTTTTAGACAGCATTCAGAGATGCAAAAAGTTGACAACTTTCAAGAAAATCCATGCACAGTTGATAA CATCAGGGGTTGTTTCTAATGACTTTGTTGTCAACAGGGTTGTCGAGTTCTTTGCAAAAGGTCCTAACTTTGTTGATTATGCATGTGATTTTTTGAGTGA ATATGATTGGAAAGTTAGCTCATTTCCATTTAATGCCTTGGTTTCTGGTTACGCTATTGGTGATAGGCCCAAGACTGCATTCTTGGTTTATAGAAGGATA GTGAAAGATGGGTTTTTGCCTGATATGTTTACTTTCCCTGCTGTATTGAAATCATGTGCTAAGTTTGTGGGGATTGGTGAGGGTAGGCAGGTTCATGGGG TGATTATTAAGATGGGTTTTGTATGTAATATCTATGTTGAAAATTCTCTTGTTCATTTTTACAGTGTTTGTAAGAGATTTGGTGATGCTAGCAGAGTGTT TGATGAAATGCTTGTGAGAGATGTGGTTTCTTGGACTGGTGTTATATCAGGGTATGTGAGAGCAGGCTTGTTTGATGAGGCTGTGGGTTTGTTTTTGAGG ATGGATGTTGAGCCTAATGCTGCAACTTTTGTTAGTGTATTAGTTGCTTGTGGGAGAAAGGGGTATTTGAGTGTAGGGAAGGGGATTCATGGGTTGAGTT TCAAGAGTGCGTTTGGGGTAGGTTTGGAGGTTAGCAATGCTCTCATGGATATGTATGTGAAGTGTGGGTGTTTGCCTGGAGCAAAACAAGTATTTGATGA GCTTGCTGAGAAGGACATTGTTTCTTGGACCAGTATTATAAGTGGATTGGTGCAATGCAATTGTCCCAAGGAGGCTTTGGAGTTGTTTCAGGATATGCAA AGCTCTGGTATTGAGCCTGATGGGATTATACTTACCAGTGTTCTTTCAGCCTGTGCCAGGCTTGGAGCTCTTGATTATGGCAGATGGGTTCATGAGCACA TCGACCGCAAGGCAATCAAATGGGATATTCAGATTGGAACTGCTATGGTTGACATGTATGCAAAGTGTGGCTGTATAGAGATGTCAATGCAGATCTTTAA TGGAATGCCTCATAAGAATGTTTTGACATGGAATGCATTGCTAAATGGCTTGGCTATGCACGGGCATGCCTACAAGGTACTTGAACTTTTCGAAGAAATG GTTAGGGTAGGCATGAGGCCAAATGAGGTGACATTTCTAGCCATTTTGACTGCCTGCTGCCACTGTGGCTTGGTCAATGAAGGGCGTCAGTACTTTAATT GGATGAAAGGTCAGCAATATAATCTTCCTCCGAGGTTAGAACACTATGGATGCATGGTGGACTTACTTTGTAGGGCTAGACTCTTGGATGAGGCGTTGGA ATTGACAAAGGCTATGCCCATGTCACCTGATGTTCGGATAATGGGAGCTCTTCTTAGTGCTTGCAAGGAAAATGGGAATACGGAACTCCCCCAAGAAATA TTAGACCGGTTTGTAGAGTTAGACTCTCATGATAGTGGCGTTTATGTGCTGCTTTCTAATATACATGCTATCAATCAAAGATGGGATGATGTCACGAGAA TAAGGAGATTGATGAAGGAGAAAGGTATTAAAAAACCCCCAGGGTCAACTGTTATAGAGTTGGATGGCAAGGCTCATGAGTTTATCGTTGGAGATACAAG ACATCCTCAGGACAAGCGCATTCGTTTATTGTTAAAAATCCTATCAGATCAAATCTTTCTTGAAGAGCATCGTGAACACTCATTCTTCATACAATCACAC TTCTGTGCAGCTTGA
AA sequence Show only first row Show all	>Potri.012G135600.1 pacid=42783469 polypeptide=Potri.012G135600.1.p locus=Potri.012G135600 ID=Potri.012G135600.1.v4.1 annot-version=v4.1 MSKIKHSLKRVLLDSIQRCKKLTTFKKIHAQLITSGVVSNDFVVNRVVEFFAKGPNFVDYACDFLSEYDWKVSSFPFNALVSGYAIGDRPKTAFLVYRRI VKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLR MDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQ SSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEM VRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEI LDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGKAHEFIVGDTRHPQDKRIRLLLKILSDQIFLEEHREHSFFIQSH FCAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	0	1
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	1.41	0.8329
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	2.44	0.8257
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082366 [exp]	2.82	0.8132
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	10.39	0.8129
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	11.09	0.7401
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.018G152300 [exp]	12.12	0.8138
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	12.32	0.8191
AT4G11690			Pentatricopeptide repeat (PPR-...		Potri.017G131600 [exp]	16.34	0.6191
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	19.51	0.8205
AT3G15130			Tetratricopeptide repeat (TPR)...		Potri.006G244500 [exp]	20.73	0.7395

Compare expression of checked genes

Potri.012G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.