Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52120 353 / 2e-123 ATPP2-A14 phloem protein 2-A14 (.1) AT3G61060 348 / 3e-121 ATPP2-A13 phloem protein 2-A13 (.1.2) AT1G12710 344 / 1e-119 ATPP2-A12 phloem protein 2-A12 (.1) AT1G63090 328 / 3e-113 ATPP2-A11 phloem protein 2-A11 (.1) AT3G53000 299 / 1e-101 ATPP2-A15 phloem protein 2-A15 (.1) AT2G02240 107 / 5e-27 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02360 103 / 6e-26 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02230 98 / 1e-23 ATPP2-B1 phloem protein 2-B1 (.1) AT5G24560 96 / 4e-23 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02250 93 / 6e-22 ATPP2-B2 phloem protein 2-B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138600 [exp] 498 / 2e-180 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1) Potri.014G075800 [exp] 377 / 1e-132 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2) Potri.001G109800 [exp] 367 / 3e-128 AT1G12710 408 / 1e-144 phloem protein 2-A12 (.1) Potri.003G121900 [exp] 366 / 4e-128 AT1G12710 401 / 9e-142 phloem protein 2-A12 (.1) Potri.006G117600 [exp] 303 / 2e-103 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.005G022000 [exp] 106 / 6e-27 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 97 / 1e-23 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012600 [exp] 94 / 2e-22 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G267000 [exp] 92 / 2e-21 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027423 [exp] 370 / 2e-129 AT3G61060 320 / 1e-109 phloem protein 2-A13 (.1.2) Lus10029593 [exp] 369 / 7e-129 AT1G12710 398 / 2e-140 phloem protein 2-A12 (.1) Lus10005769 [exp] 365 / 1e-127 AT3G61060 308 / 3e-105 phloem protein 2-A13 (.1.2) Lus10024494 [exp] 348 / 8e-121 AT1G12710 377 / 6e-132 phloem protein 2-A12 (.1) Lus10008642 [exp] 308 / 6e-105 AT3G53000 470 / 6e-169 phloem protein 2-A15 (.1) Lus10020674 [exp] 105 / 1e-26 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10025666 [exp] 104 / 9e-26 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 103 / 3e-25 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10029872 [exp] 99 / 4e-24 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10025660 [exp] 92 / 2e-21 AT2G02360 183 / 9e-57 phloem protein 2-B10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.012G136200.1 pacid=42784334 polypeptide=Potri.012G136200.1.p locus=Potri.012G136200 ID=Potri.012G136200.1.v4.1 annot-version=v4.1 ATGGGAGCTGGCTCGTCTAGTTTGGCCTTGGAAAGTGAGGGAGGTTCTTCTCCAGTAAGACCTAATCTTGATGATATCCCAGAAAGTAGTGTTGCTTCTA TTCTTATGCACTTGGATCCTCCTGAGATATGCAAACTAGCCAAGGTGAACAAGACTTTTCATGGTGCTTCTTTGGCTGATTTTGTGTGGGAAACAAAGCT TCCATCAAACTATAAGTATCTTGTAGAGAAGATTTTAGGTCAGAGTCCTGAGAGTTTGAGCAAGAAAGAGATCTATGCAAGATTGTGTCAACCTAATTGC TTTGAAGATGGCACCAAGCAAGTTTGGTTGGATAAAAGTAGTGGCAAGATTTGTGTAGCTGTTTCTTATAAGGCATTAAGGATAACTGGGATAGATGATC GAAGATATTGGAATCATATTTCATCTGAGGAATCCAGGTTCAACACAATTGCGTATCTTCAACAAATATGGTGGCTTGAAGTAGTGGGAGAATTAGAGTT TGAATTTCCAGCAGGAACTTATAGCCTATTCTTCAAGCTCCAACTGGGAAAAACCTCGAAAAAATTTGGCCGACGAGCCTGTAATGTCGATCAAGTTCAT GGTTGGGGTGCTAAACCTGTCCGATTTCAGCTTTCAACATCGAATGGCCAGCAAGCCTCATCAGAATGTTACTTGCATCAACAAGGAAACTGGGGGCATT ACCGTGTTGGTGATTTTGTTGTTGACAACAAAAATACCCCAATGAAGCTCAAATTTTCCATGATGCAGATTGATTGTACACATACTAAAGGTGGTGTGTG CTTAGATTCTGTGTTGATATGTCCTAGTGAATTTAGAGAAAAGTTGAAGCAATTTTAA
AA sequence Show only first row Show all	>Potri.012G136200.1 pacid=42784334 polypeptide=Potri.012G136200.1.p locus=Potri.012G136200 ID=Potri.012G136200.1.v4.1 annot-version=v4.1 MGAGSSSLALESEGGSSPVRPNLDDIPESSVASILMHLDPPEICKLAKVNKTFHGASLADFVWETKLPSNYKYLVEKILGQSPESLSKKEIYARLCQPNC FEDGTKQVWLDKSSGKICVAVSYKALRITGIDDRRYWNHISSEESRFNTIAYLQQIWWLEVVGELEFEFPAGTYSLFFKLQLGKTSKKFGRRACNVDQVH GWGAKPVRFQLSTSNGQQASSECYLHQQGNWGHYRVGDFVVDNKNTPMKLKFSMMQIDCTHTKGGVCLDSVLICPSEFREKLKQF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	0	1
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Potri.004G033900 [exp]	1.73	0.9140
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Potri.001G190700 [exp]	4.58	0.8993
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.004G144300 [exp]	6.92	0.8674	SQN.2
AT1G54070			Dormancy/auxin associated fami...		Potri.001G164800 [exp]	8.71	0.9081
AT4G14270			unknown protein		Potri.008G074600 [exp]	10.00	0.8552
AT1G60160			Potassium transporter family p...		Potri.010G094400 [exp]	12.12	0.8596
AT4G19160			unknown protein		Potri.001G193400 [exp]	15.49	0.8664
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.003G052800 [exp]	15.87	0.8511
AT3G60390	HD	HAT3	homeobox-leucine zipper protei...		Potri.014G045100 [exp]	21.49	0.8393
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.005G156600 [exp]	27.00	0.8354

Compare expression of checked genes

Potri.012G136200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.