Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52140 114 / 1e-30 RING/U-box superfamily protein (.1) AT3G63530 94 / 1e-23 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G19910 91 / 2e-21 RING/U-box superfamily protein (.1) AT5G07225 86 / 3e-20 RING/U-box superfamily protein (.1) AT2G15530 86 / 2e-19 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 84 / 1e-18 RING/U-box superfamily protein (.1) AT5G24870 82 / 5e-18 RING/U-box superfamily protein (.1.2) AT4G34040 81 / 7e-18 RING/U-box superfamily protein (.1) AT4G31450 80 / 2e-17 RING/U-box superfamily protein (.1) AT5G10650 79 / 3e-17 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138700 [exp] 177 / 3e-57 AT5G52140 72 / 6e-16 RING/U-box superfamily protein (.1) Potri.003G204500 [exp] 102 / 1e-26 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 101 / 3e-26 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 99 / 2e-25 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 93 / 6e-23 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 94 / 9e-23 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 91 / 1e-21 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 88 / 4e-20 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 85 / 4e-19 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005768 [exp] 118 / 2e-32 AT5G52140 90 / 7e-21 RING/U-box superfamily protein (.1) Lus10031275 [exp] 97 / 1e-24 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 97 / 2e-24 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 97 / 2e-24 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10031842 [exp] 93 / 5e-23 AT3G63530 160 / 1e-48 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 88 / 2e-20 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10002554 [exp] 84 / 2e-20 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10010182 [exp] 87 / 6e-20 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10010372 [exp] 80 / 2e-17 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 76 / 5e-16 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.012G136400.1 pacid=42782773 polypeptide=Potri.012G136400.1.p locus=Potri.012G136400 ID=Potri.012G136400.1.v4.1 annot-version=v4.1 ATGATGGGACAACCATGGCATGGAAGCTATGGTTCGTATTTGGAAGATGATGAAGCTATAGCTAGAGAACTGCATCAGAGCTACAATTCATATGTAGCTG ATGATGCAGCTATAGCTAGAGAACTGCAGGAGATGGAGGATAGCTTGGGGACTATGGTCTTATATGATGGAGCCTTTGGAAGTATAATAGACTCTGCATG GGAGGCTAATCTTGGAGGAACTTCTGCTAATCGTGGAGGAACTTCTGCTAATCATGGAGGTTCTGCTAATCGTGGAGGAACTTCTATTCGAGAGACTAAT GTTCAAACACGAGATGGCGGTGAAGTTGATTTAGATAATATGTCATATGAGGAAATGCATCGATTCGAAGAATCCATGGGTAGTGTAAGCAAAGGTCTGT CAAGGGAAGCAGTCTCTAGATTGCCTGTTCACAAGTACAGTCCATCAAGCACAAGAAGCAATTCAGGAGATGCAGAGTGTGTGATATGCAAAATGGAATA CGAGAGGGGGGATCGCTTGGTCACCTTGCCCTGTGCGCACCAATATCATGAGGATTGCATTAAGAAATGGTTGGAAGATAACAAGAATTGCTGTGTCTGC AAAGAGGATGTAGCTGTTAATTAG
AA sequence Show only first row Show all	>Potri.012G136400.1 pacid=42782773 polypeptide=Potri.012G136400.1.p locus=Potri.012G136400 ID=Potri.012G136400.1.v4.1 annot-version=v4.1 MMGQPWHGSYGSYLEDDEAIARELHQSYNSYVADDAAIARELQEMEDSLGTMVLYDGAFGSIIDSAWEANLGGTSANRGGTSANHGGSANRGGTSIRETN VQTRDGGEVDLDNMSYEEMHRFEESMGSVSKGLSREAVSRLPVHKYSPSSTRSNSGDAECVICKMEYERGDRLVTLPCAHQYHEDCIKKWLEDNKNCCVC KEDVAVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52140			RING/U-box superfamily protein...		Potri.012G136400 [exp]	0	1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.012G141000 [exp]	2.00	0.8833
AT5G54850			unknown protein		Potri.011G136600 [exp]	3.60	0.8940
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Potri.011G079450 [exp]	4.35	0.7892
AT5G10760			Eukaryotic aspartyl protease f...		Potri.018G014500 [exp]	10.00	0.8555
AT5G41761			unknown protein		Potri.001G364550 [exp]	13.41	0.8428
					Potri.018G003201 [exp]	14.89	0.8366
					Potri.004G063101 [exp]	25.45	0.7979
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	27.49	0.7979
AT5G25950			Protein of Unknown Function (D...		Potri.006G233700 [exp]	27.82	0.7929
					Potri.010G212850 [exp]	34.59	0.7862

Compare expression of checked genes

Potri.012G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.