Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45560 370 / 3e-123 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G61040 365 / 2e-121 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45550 363 / 1e-120 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 362 / 3e-120 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 361 / 1e-119 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G52970 341 / 9e-112 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 337 / 2e-110 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45580 323 / 8e-105 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12300 298 / 4e-95 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 288 / 4e-91 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G136600 [exp] 968 / 0 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G109300 [exp] 520 / 0 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.015G138900 [exp] 516 / 1e-180 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.012G137200 [exp] 498 / 2e-173 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G025200 [exp] 471 / 5e-163 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 376 / 1e-125 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 363 / 1e-120 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 359 / 5e-119 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 357 / 2e-118 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005765 [exp] 474 / 7e-164 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 466 / 1e-160 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10006323 [exp] 466 / 1e-160 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10027425 [exp] 437 / 2e-149 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10027428 [exp] 429 / 2e-146 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10005766 [exp] 416 / 5e-141 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005767 [exp] 404 / 9e-137 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027426 [exp] 386 / 2e-129 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10040353 [exp] 381 / 1e-127 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027429 [exp] 378 / 3e-126 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G136800.1 pacid=42782644 polypeptide=Potri.012G136800.1.p locus=Potri.012G136800 ID=Potri.012G136800.1.v4.1 annot-version=v4.1 ATGGTTTCAATAAGTGTTTTAGCAAACTCCTATCCATCTTTTCCCATGTTGTTTCTTCTAGCAATATTATTGTTGCTTTCCCTTGTCCTAAAACACAAAT CTTCCAAAGTCCCGGCTATTCCTCCAGGGCCAAAATCATGGCCTATTATAGGAAATGTACTTCAAATAGGAAACAAGCCCCATATTTCCTTGACTAAATT AGCACAGGTTTATGGTCCACTCATGTCCCTCCGACTAGGGACTCAACTTGTTGTCGTCGGGTCTTCTCGGGAAGCAGCCTCCGAAATCCTCAAAACCCAT GACCGAGAACTCTCCGGCCGGTGTGTGCCTCACGCATCCTTTGCTAAGGACCCTAAGCTGAATGAGGACTCCATAGCTTGGACGTTTGAGTGCACCGACC GATGGAGGTTCTTTCGTTCCCTGATGAGGAATGAGCTATTCTCTTCTAAAGTCGTTGATGGACAGTCAAGTACAAGAGAAACCAAGGCCAAAGAAATGAT AGATTTCTTGAAAAAGAAGGAAGGAGAGGGAGTCAAAATACGAGATATTGTGTTTGTTTATACATTTAATGTATTGGCGAACATTTACTTATCAAAAGAC TTGATAGATTATGATCAAACTGGAGAGTGCCAAAGAGTGTGTGGGCTTGTAAGGGAAATGATGGAGTTACATACAACTCTAAACATATCGGATTTGTATC CTATACTAGGTAGCTTGGATCTTCAAGGTCTGAGTAGAAAGACTAATGAGTGCGGGAGTAGAATTCAGGAATTATGGAGGAGTATCATCAAAGAACGCAG AGAAGGCCGCAACGATACAGGAGATGATGATAATTCCAGTAAACGTAAAGATTTCCTTGATGTTTTGCTTGATGGGGAATTTTCTGATGAGCAAATCAGT TCATTCTTCGTGGAACTCTTAGCTGCAGTATCGGATAGTTCTAGCTCAACAATCGAATGGGCGATGGCAGAACTGATGAGGAATCCACAAGCAATGAAAC AACTTCGCGAAGAACTTGCTGGAGAAACTCCTGAAGACTTGATAACAGAATCAAGCCTAGCAAAATTCCCTTACTTGCATTTATGTGTCAAGGAAACTTT GAGATTACACCCTCCAGCACCATTACTAATACCTCACCGAGCAACAGAAGATTGTCAAGTTTTGGACTGCACCATACCAAAGGACACCCAAGTTCTTGTG AATGTATGGGCAATTGCAAGAGACCCTGCCAGTTGGGAAGACCCTTTGTGTTTTAAACCTGAAAGATTCCTGAATTCTGATCTGGATTACAAAGGAAACC ATTTTGAGTTTTTGCCTTTTGGAAGTGGAAGGAGGATTTGTGCCGGGTTACCAATGGCTGTTAAGAAAGTTCAGCTGGCTTTGGCCAATTTAATCCATGG CTTTGACTGGTCTCTACCAAATAACATGCTTCCTGATGAACTAGACATGGCTGAGAAGTATGGTATCACACTGATGAAGGAGCAACCTCTTAAGCTTATA CCGAAATTGAGGAAATGA
AA sequence Show only first row Show all	>Potri.012G136800.1 pacid=42782644 polypeptide=Potri.012G136800.1.p locus=Potri.012G136800 ID=Potri.012G136800.1.v4.1 annot-version=v4.1 MVSISVLANSYPSFPMLFLLAILLLLSLVLKHKSSKVPAIPPGPKSWPIIGNVLQIGNKPHISLTKLAQVYGPLMSLRLGTQLVVVGSSREAASEILKTH DRELSGRCVPHASFAKDPKLNEDSIAWTFECTDRWRFFRSLMRNELFSSKVVDGQSSTRETKAKEMIDFLKKKEGEGVKIRDIVFVYTFNVLANIYLSKD LIDYDQTGECQRVCGLVREMMELHTTLNISDLYPILGSLDLQGLSRKTNECGSRIQELWRSIIKERREGRNDTGDDDNSSKRKDFLDVLLDGEFSDEQIS SFFVELLAAVSDSSSSTIEWAMAELMRNPQAMKQLREELAGETPEDLITESSLAKFPYLHLCVKETLRLHPPAPLLIPHRATEDCQVLDCTIPKDTQVLV NVWAIARDPASWEDPLCFKPERFLNSDLDYKGNHFEFLPFGSGRRICAGLPMAVKKVQLALANLIHGFDWSLPNNMLPDELDMAEKYGITLMKEQPLKLI PKLRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136800 [exp]	0	1
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136600 [exp]	1.00	0.9877	CYP80D1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	4.24	0.9498
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	6.00	0.9439
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	6.00	0.9391
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.012G105700 [exp]	6.32	0.9401
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	9.16	0.9360
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G102901 [exp]	9.48	0.9279
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.007G025900 [exp]	10.19	0.9419
					Potri.006G213801 [exp]	12.12	0.9171
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.014G175000 [exp]	13.85	0.9352	Pt-ZOG1.11

Compare expression of checked genes

Potri.012G136800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.