Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51940 210 / 3e-71 NRPE6A, NRPD6A, NRPB6A RNA polymerase Rpb6 (.1) AT2G04630 201 / 8e-68 NRPE6B, NRPB6B RNA polymerase Rpb6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138800 [exp] 224 / 1e-76 AT5G51940 197 / 7e-66 RNA polymerase Rpb6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015000 [exp] 202 / 5e-68 AT2G04630 209 / 9e-71 RNA polymerase Rpb6 (.1) Lus10038878 [exp] 200 / 5e-67 AT2G04630 209 / 8e-71 RNA polymerase Rpb6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01192 [poplar] [flax] RNA_pol_Rpb6 RNA polymerase Rpb6
Representative CDS sequence Show only first row Show all	>Potri.012G136900.1 pacid=42783226 polypeptide=Potri.012G136900.1.p locus=Potri.012G136900 ID=Potri.012G136900.1.v4.1 annot-version=v4.1 ATGGCAGACGAAGATTACAATGATGTTGACATGGGATATGAGGATGAGCCACCAGAGCCTGAGATTGAAGAAGGGGTTGAAGAAGATGCAGATAATGATA ACAATGAAGATGACAAAGGGGAACCAATTGAAACTGAAGACAAAGAGGAACAGGAACCAGTGGAGCGGCCTCGTAAAACATCAAAATTTATGACAAAATA TGAGCGTGCGAGAATTTTGGGAACCCGTGCTCTTCAAATCAGCATGAATGCTCCCGTGATGGTTGAGTTGGAGGGTGAGACTGACCCGCTCGAGATTGCT ATGAAGGAGCTTCGTGAGCGAAAAATACCTTTCACCATCCGTCGCTACTTGCCTGATGGAAGTTATGAAGACTGGGGAGTTGATGAACTAATCGTGGAGG ACTCGTGGAAGAGGCAAGTGGGAGGTGATTGA
AA sequence Show only first row Show all	>Potri.012G136900.1 pacid=42783226 polypeptide=Potri.012G136900.1.p locus=Potri.012G136900 ID=Potri.012G136900.1.v4.1 annot-version=v4.1 MADEDYNDVDMGYEDEPPEPEIEEGVEEDADNDNNEDDKGEPIETEDKEEQEPVERPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA MKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	0	1
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	1.00	0.9570
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	2.00	0.9263
AT4G27130			Translation initiation factor ...		Potri.011G134700 [exp]	2.23	0.9088
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	2.44	0.9205
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	3.46	0.9197
AT1G17100			SOUL heme-binding family prote...		Potri.015G080000 [exp]	4.24	0.8955
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	4.47	0.8855
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Potri.006G150000 [exp]	5.29	0.8950
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	6.00	0.8692
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	6.24	0.8577

Compare expression of checked genes

Potri.012G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.