Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 373 / 2e-124 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 358 / 2e-118 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 354 / 8e-117 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 352 / 3e-116 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT3G61040 337 / 1e-110 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT3G52970 327 / 3e-106 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT5G07990 320 / 7e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12300 293 / 3e-93 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT2G45580 293 / 5e-93 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12320 286 / 2e-90 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G138900 [exp] 641 / 0 AT1G33720 359 / 6e-119 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G109300 [exp] 469 / 6e-162 AT1G33720 363 / 1e-120 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Potri.001G025200 [exp] 464 / 7e-160 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G136800 [exp] 462 / 3e-159 AT2G45560 370 / 2e-123 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.012G136600 [exp] 460 / 2e-158 AT2G45560 360 / 3e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Potri.001G113900 [exp] 355 / 2e-117 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 355 / 2e-117 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 354 / 5e-117 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 352 / 4e-116 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005765 [exp] 528 / 0 AT2G45550 374 / 9e-125 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027431 [exp] 503 / 3e-175 AT2G45560 379 / 1e-126 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027428 [exp] 483 / 2e-167 AT2G45560 360 / 2e-119 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) Lus10027425 [exp] 473 / 1e-163 AT3G61040 352 / 1e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10005766 [exp] 466 / 7e-161 AT3G61040 352 / 2e-116 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) Lus10040353 [exp] 454 / 6e-156 AT2G45570 350 / 1e-115 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10006323 [exp] 432 / 1e-147 AT1G33720 371 / 1e-123 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) Lus10005767 [exp] 422 / 2e-143 AT2G45550 338 / 1e-110 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10027429 [exp] 421 / 3e-143 AT2G45570 351 / 6e-116 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) Lus10027426 [exp] 410 / 8e-139 AT2G45570 334 / 2e-109 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G137200.3 pacid=42784062 polypeptide=Potri.012G137200.3.p locus=Potri.012G137200 ID=Potri.012G137200.3.v4.1 annot-version=v4.1 ATGCGCTCAATCTTCTCAGAAAATATGGATCAAAGATTTTTGCAAAGATTGTTCAGTCTTGTATCCTCTGCTGAAATTCTATTTCTACTTCTTTTACCTC TAACATTTATCATCCTCAAGAACATTATAAGGTCATGTTCTGAAAGCAAGTATCTTCCACCTGGTCCAAAGCCATGGCCTATCATAGGCAACCTTCTCCA TGTGGGGAATCAGCCTCATGTCTCCTTGGCAGAAATTGCAAAAATTCATGGCCCCCTCATCTCACTAAGGCTAGGAACTCAACTCCTTGTTGTTGGTTCT TCAGCAAAGGCAGCAGCTGAGATTCTCAAAACTCACGATCGATTCCTCTCGGCTCGACACGTACCTCAAGTGATTCCTCGGGAAAGCCATGTCCTTCGCC GGGTTGCGCTCGTCTGGTGCCCTGAAAGCATTGATACATGGAAATTGCTACGAGGATTATGTAGGACTGAGTTATTTTCAGCCAAAGCAATAGAGTCAAG TGCGACTTTGAGAGAGAAGAAAGTTGGGGAGTTGATGGATTTTTTGGTAGCAAGAGAAGGAAAAGTTGTTAGCATTGGAGAAGTAGTGTTTAGTACTGTA TTCAACACAATATCGAATCTTTTATTCTCCAATGATCTTGCTGGTTTGGAAGAGAAAGGGATGTCTAGTGGATTGAAGAGCCATGTTCGGAAGTTGATGT TGTTGGTTGCTACTCCAAACATAGCCGATTTTTATCCTATATTTGCAGGGTTGGATCCTCAAGGTTTAAGAAGGAAATTATCCAAGCTTGTTGAAGAAAC TTTTGCTATATGGGCAATCAACATTAAGGAAAGAAGAAATAGCTATGTCCATGATTCTCCTAAAAGAGATTTCTTGGATGTTTTTCTTGCAAATGGGTTT GACGACGATCAAATCAATTGGTTAGCTGCAGAATTGTTCAGCGCAGGCACAGACACTACTGCCACAACAATAGAGTGGGCAGTGGCCGAGATACTGAAGA ACAAAGAAGTTATGAAGAAAGTTGACGAAGAGCTCGAAAGAGAAATCACAAAGAATACAATTTCTGAATCTGATGTCTCTGGGCTTCCATATCTAAATGC ATGTATAAAGGAAACCTTGAGGTTACACCCTCCTGTGCCATTGCTTGTTCCACATCGCGCTACCGAGACCTGTGAGGTTATGAAGTACACGATTCCAAAG GATTCTCAGGTTCTTGTGAATGTTTGGGCAATTAGCCGTGATCCGTCGACCTGGGAAGACCCATTATCATTTAAACCTGACAGGTTTCTTGGCTCAAATT TGGAATTCAAAGGTGGCAACTACGAGTTTCTTCCATTCGGTGCTGGAAGAAGAATCTGCCCTGGATTACCCATGGCCAATAAACTTGTCCCCTTGATTTT AGCCTCTTTGATCCGTTGTTTTGACTGGTCACTTCCCAATGGTGAGGATCTTGCAAAGTTAGACATGAAGGACAAGTTTGGTGTTGTTTTGCAGAAGGAG CAACCTCTCGTTCTTGTTCCCAAAAGAAGATTGTAA
AA sequence Show only first row Show all	>Potri.012G137200.3 pacid=42784062 polypeptide=Potri.012G137200.3.p locus=Potri.012G137200 ID=Potri.012G137200.3.v4.1 annot-version=v4.1 MRSIFSENMDQRFLQRLFSLVSSAEILFLLLLPLTFIILKNIIRSCSESKYLPPGPKPWPIIGNLLHVGNQPHVSLAEIAKIHGPLISLRLGTQLLVVGS SAKAAAEILKTHDRFLSARHVPQVIPRESHVLRRVALVWCPESIDTWKLLRGLCRTELFSAKAIESSATLREKKVGELMDFLVAREGKVVSIGEVVFSTV FNTISNLLFSNDLAGLEEKGMSSGLKSHVRKLMLLVATPNIADFYPIFAGLDPQGLRRKLSKLVEETFAIWAINIKERRNSYVHDSPKRDFLDVFLANGF DDDQINWLAAELFSAGTDTTATTIEWAVAEILKNKEVMKKVDEELEREITKNTISESDVSGLPYLNACIKETLRLHPPVPLLVPHRATETCEVMKYTIPK DSQVLVNVWAISRDPSTWEDPLSFKPDRFLGSNLEFKGGNYEFLPFGAGRRICPGLPMANKLVPLILASLIRCFDWSLPNGEDLAKLDMKDKFGVVLQKE QPLVLVPKRRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.012G137200 [exp]	0	1
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.004G042700 [exp]	6.32	0.8133	RING.3
AT3G02360			6-phosphogluconate dehydrogena...		Potri.017G106900 [exp]	31.96	0.7422	GND.2
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	51.14	0.7281
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	76.83	0.7197	Pt-SDH1.1
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.004G021500 [exp]	97.26	0.7286
AT5G27760			Hypoxia-responsive family prot...		Potri.005G024500 [exp]	118.42	0.7385
					Potri.006G091150 [exp]	150.45	0.7039
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	192.06	0.7369
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055100 [exp]	204.66	0.7269
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	228.47	0.7310	GT4.2

Compare expression of checked genes

Potri.012G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.