Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00750 874 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 860 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 774 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 769 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 719 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 707 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 585 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 548 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 531 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 487 / 1e-165 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139000 [exp] 1100 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 895 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 880 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 808 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 797 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 731 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 724 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 704 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 699 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005764 [exp] 902 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 780 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 769 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 769 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041366 [exp] 743 / 0 AT4G00750 784 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 701 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 701 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036747 [exp] 695 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 694 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 687 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.012G137300.1 pacid=42782650 polypeptide=Potri.012G137300.1.p locus=Potri.012G137300 ID=Potri.012G137300.1.v4.1 annot-version=v4.1 ATGGCTAGTCCTAATCAACAGTACCATGGCGCCACCTTCAAACCCCACAAACACTTCGCTGCCAACAGCCCTTTCTTCTTCAAGAAAACCAATCTCTACA CCTTAGCCCTCCTTCTTTTCCTTTGCACCTTCTCTTATCTCTTTGGTGTCTGGCGCCACGAAGGTGGCGGCGGCGTCTTATCCGTTAACAAGAGCGCCGC TACTGCCACCACCAACACCATTGTTTCAATCCCATGTAACCCCTCAAAAGCCACCACTGCTGCAACAAGAGGGGGGAAGCCCCTTGACTTTTCATCCCAC CACAAGGCAGATGATTTAGATTTCACGTTAACATCAGAAGTCAAAAGCTACCCATCATGCAACGTGAACTTCAGCGAATACACACCGTGTGAGGATGCAA AAAGATCATTGAGATTCAAGAGGCACCAATTGATATATAGAGAAAGGCATTGTCCAGAGAAACATGAGATACTAAAGTGTCGTATACCAGCTCCACACGG GTACAAGAACCCTTTTAAATGGCCTGCTAGTAGGGATTTTGCTTGGTACAATAACGTGCCACACAAGCATCTAACGGTGGAGAAGGCGGGGCAAAACTGG ATCAGATTTGCAGGTGATCGGTTTAGATTCCCTGGTGGGGGGACTATGTTTCCTAATGGTGCTGATGCTTATATTGATGATATTGGAAGATTGATCAATC TCAAAGATGGGTCTATTAGGACTGCCATTGATACTGGTTGTGGGGTTGCAAGTTGGGGAGCATATCTTCTGTCACGCAATATATTAACAATGTCATTTGC ACCAAGGGACACTCACGAAGCACAAGTGCAATTTGCCCTAGAACGAGGAGTTCCTGCCTTGATCGGAATTTTGGCCTCAAAAAGGCTGCCATACCCATCT AGAGCTTTTGACATGGCACATTGCTCTCGTTGCCTTATTCCATGGGCCGAATCCGGAGGACAATATTTGATTGAAGTTGATCGAGTTCTAAGACCTGGTG GGTATTGGGTTTTGTCTGGTCCTCCAATTAATTGGAAAAAACATTGGAAGGGCTGGGAAAGAACAAAAGATGATTTGAAGGATGAACAGATGAAAATTGA GGCTGTGGCTAAAAGCTTATGTTGGAGAAAATTTGTCGAGAAAGGAGACATTGCTATTTGGCAAAAACCAATCAATCACTTGAATTGTAAGGTTAACAGG AAGATCACACAAAATCCATATTTCTGTCCTGCTCAGGATCCTGAAAAAGCCTGGTACACAAACATGGAGACATGTTTGACTCACTTGCCTGAGGTATCTA ACAAGGAAGACGTCGCCGGCGGGGAATTGCCGAAATGGCCTGAGAGATTGAATGCTGTGCCACCAAGGATTAGTAGGGGAACTTTGGAAGGAATTACAGC TGAGACTTTCCAGAAAGATACAGCTCTATGGAATAGGAGAGTATCTTATTATAAAGCTGTAAATAACCAATTAGAACAAGCTGGTAGGTACCGCAACATT TTGGACATGAACGCTTACTTGGGTGGATTCGCTGCTGCTCTTACTGAGGACCCTCTTTGGGTTATGAATGTGGTTCCTATCCAAGCTAAGGTTAACACTC TTGGAGTAATTTATGAACGAGGATTAATTGGAACATATCAGGATTGGTGTGAAGCCATGTCTACGTATCCAAGAACTTATGACTTAATCCATGCTGATTC TGTATTTAGCCTCTATGATGGCAGATGTGAAATGGAAGATATTTTGCTAGAGATGGATAGGATTCTGAGGCCTGAAGGAAGTGTAATCTTTAGAGATGAT GTTGATGTGTTGGTGAAGATCAAGAAAATAAGTGATGGACTGAACTGGGATAGTCAAATTGTTGATCACGAAGATGGACCTCATCAGAGGGAAAAGCTTC TTTTTGCTATCAAGACCTACTGGACAGCTCCTGCTGAAGGCCGACATGAGTCCACCAGATCTTCCTAA
AA sequence Show only first row Show all	>Potri.012G137300.1 pacid=42782650 polypeptide=Potri.012G137300.1.p locus=Potri.012G137300 ID=Potri.012G137300.1.v4.1 annot-version=v4.1 MASPNQQYHGATFKPHKHFAANSPFFFKKTNLYTLALLLFLCTFSYLFGVWRHEGGGGVLSVNKSAATATTNTIVSIPCNPSKATTAATRGGKPLDFSSH HKADDLDFTLTSEVKSYPSCNVNFSEYTPCEDAKRSLRFKRHQLIYRERHCPEKHEILKCRIPAPHGYKNPFKWPASRDFAWYNNVPHKHLTVEKAGQNW IRFAGDRFRFPGGGTMFPNGADAYIDDIGRLINLKDGSIRTAIDTGCGVASWGAYLLSRNILTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPS RAFDMAHCSRCLIPWAESGGQYLIEVDRVLRPGGYWVLSGPPINWKKHWKGWERTKDDLKDEQMKIEAVAKSLCWRKFVEKGDIAIWQKPINHLNCKVNR KITQNPYFCPAQDPEKAWYTNMETCLTHLPEVSNKEDVAGGELPKWPERLNAVPPRISRGTLEGITAETFQKDTALWNRRVSYYKAVNNQLEQAGRYRNI LDMNAYLGGFAAALTEDPLWVMNVVPIQAKVNTLGVIYERGLIGTYQDWCEAMSTYPRTYDLIHADSVFSLYDGRCEMEDILLEMDRILRPEGSVIFRDD VDVLVKIKKISDGLNWDSQIVDHEDGPHQREKLLFAIKTYWTAPAEGRHESTRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	1.41	0.9908
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	3.16	0.9867
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	3.87	0.9823
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	4.89	0.9798	CYP87.2
AT1G66120			AMP-dependent synthetase and l...		Potri.016G034800 [exp]	5.47	0.9795
AT2G01900			DNAse I-like superfamily prote...		Potri.008G139600 [exp]	5.47	0.9794
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Potri.013G128800 [exp]	6.63	0.9651
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	8.36	0.9744
AT3G01190			Peroxidase superfamily protein...		Potri.004G023100 [exp]	8.36	0.9720
AT5G22890	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G217100 [exp]	8.66	0.9688

Compare expression of checked genes

Potri.012G137300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.