Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 289 / 7e-87 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 256 / 2e-75 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38170 250 / 9e-75 FRS9 FAR1-related sequence 9 (.1) AT4G15090 251 / 1e-72 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 247 / 5e-71 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT3G06250 236 / 2e-67 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT2G32250 236 / 2e-67 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT1G76320 229 / 2e-65 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT5G18960 226 / 7e-64 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G19990 203 / 9e-56 FAR1_related FRS1 FAR1-related sequence 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G139300 [exp] 930 / 0 AT4G38180 359 / 1e-112 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 282 / 2e-84 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 281 / 4e-84 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 281 / 5e-84 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209100 [exp] 273 / 2e-83 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.005G257600 [exp] 276 / 3e-82 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.008G011800 [exp] 276 / 1e-81 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.016G058500 [exp] 264 / 2e-78 AT4G38180 311 / 6e-95 FAR1-related sequence 5 (.1) Potri.016G058700 [exp] 265 / 7e-78 AT4G38180 345 / 8e-107 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 224 / 8e-65 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.012G137500.9 pacid=42783998 polypeptide=Potri.012G137500.9.p locus=Potri.012G137500 ID=Potri.012G137500.9.v4.1 annot-version=v4.1 ATGGATTTTGACAATTCCCTGCGGTCTCAAAGGATTAGAGATATGAAGGAGGGGGAGGCAGGACGTTTGCTGCGTTATTTCCAGAGGCAGCACATTGAAA ATCCATCATTCATTCATAGCATTCAGGTTGATATTGATGACAAAGTAAGTAACATATTCTGGGCTGATGATAAAATGGTAGTGGACTATGATCATTTTGG TGATGTGGTTTGTTTGGACACAAGTTACCGAATGAATAAAGATCTTCAGCCATTTGTACAGTTCATAGGAGTGAACCACCACAATCAAGCAATAATTTTT GCTGCTGCACTTTTATTTGATGACACTGTTGAATCACTTAAGTGGTTGTTTAATACATTTCTAGAGGCAATGTCTGGAAAGAAGCCAAAAGTCATTCTTA CAGATCAAGATGCAGCAATAGTTGAAGCAATCAATTCAATTTTACCTGAAACAAGCCATCGTATCTGTGTTTGGCAGATGTACCAAAATGCTCTTAAGCA TCTTAGCCTTGTAGTGAAGGATATGGAATCCTTTTCTAATGACTTTCGAAGTTGTATTTATGACTACAATAATGAGGAGGCTTTTGTTCACGCTTGGGAG GGTCTGCTGGACAAATATGGTCTTCAACAAAATGACCGGCTAAGATGGATGTTTAGAGAAAGAGAGAAATGGTCCATAGCATATGGCAGGAACACATTTT TTCTTGACATGAAAGGCTCGCATGTGGCTGAAGATTTATCTAATAACTTGAGAAGTTACCTAAACTCTGACCAAGATGCTCTTCAGATTTACAAAATTTT TGAAAGGGTGGCAGACGAGCAACGCTTCAAAGAAACACATGCTAATGATGAAATGACTAGATCCATGCCAAGATTACTGGGGAATGTAGCTTTGCTAAAG CATGCAAGTGGTATTTATACGCCAAAGGCTTTTGAATTATTTCAGAAGGAATATGAGAAGTGTTTAAATGTTGTAGTTACCCAGTGCAATGAGAAAGGAT TTTTGCTTGAATATAAAGTCAGTACATTTGGACAGACTCAAGAATATACAGTCATATTCAATTCAGCAGATGACACAGTTGTTTGCAATTGCATGAAATT TGAGAATGTTGGGTATTTATGTGGCCATGCTTTGAAAGTTCTTGATAACTGGAACATAAAGGTGGTCCCGTCCCGATATATCTTGAAGAGATGGACAAAA GATACAAGGCTCGGAAGAGTAAGAGATAGCGGTGAGTTCACTGCTAAAGAGAACCTGAAGTTGGCTGTAGCTAGCCGTTACAAAGATTTGTGCCGCAACA TAATCAAAATATCAGCCAGAGCAGCTGAATCAGAGGATGCGTTTCAGTTTGCATTAAGACAACTAGATGAGCTAATTGAAGGTGTAGAGAAGATCTTGAT GCTGAAAGCTGAGGAGGGTCAAGGCATCACCTCTAGTAGCACAGTGGTGAATGGTTTTGAAAGTGAAAATGCTGAGTTTTTCTTGGATGAGGAAGAAATT GAGGATCAAGGCGAAGACAACAGAGTGGACGGAACCAAAGAAAAGGAGAGTGCTGCTCCTGATAGACATCAACTGAAGAATATAAATGAAAAGAGCTGTA AGAAAAAAAGATTTCAGCTTCGACAAACACCTTCACCAAATACTAGCAGCTGCATTTCAAGTCCTCCACAAGCACGTGTTATGACTGAAGGCCAATCTCA CAATCCTCTTCTGCAGGGTTTGTATAATTTTGAGGCTAATCAGGTGGTTCAGTGCATGTACCAGCAGCAGAATCCAGTAATGGACCATGAAGATAATCCT AACATGTACCAACAATCAGTTTTTTATGCTGACCAGCATGTCTCACCTACTCAAATTCCATTACTCCAGGAACCCTTAATCCGGAGCGCCTACCACGAGT CCCTCACTAACAATGCTCTATTTAGGCAGGCAATGGATCTCGATCTCCAACATCCTCAATCATCTTCAATCTTACTATATGATCATAGATTCAGAACTTT TGACACTTCTTATCTTGGACTCAAGTAA
AA sequence Show only first row Show all	>Potri.012G137500.9 pacid=42783998 polypeptide=Potri.012G137500.9.p locus=Potri.012G137500 ID=Potri.012G137500.9.v4.1 annot-version=v4.1 MDFDNSLRSQRIRDMKEGEAGRLLRYFQRQHIENPSFIHSIQVDIDDKVSNIFWADDKMVVDYDHFGDVVCLDTSYRMNKDLQPFVQFIGVNHHNQAIIF AAALLFDDTVESLKWLFNTFLEAMSGKKPKVILTDQDAAIVEAINSILPETSHRICVWQMYQNALKHLSLVVKDMESFSNDFRSCIYDYNNEEAFVHAWE GLLDKYGLQQNDRLRWMFREREKWSIAYGRNTFFLDMKGSHVAEDLSNNLRSYLNSDQDALQIYKIFERVADEQRFKETHANDEMTRSMPRLLGNVALLK HASGIYTPKAFELFQKEYEKCLNVVVTQCNEKGFLLEYKVSTFGQTQEYTVIFNSADDTVVCNCMKFENVGYLCGHALKVLDNWNIKVVPSRYILKRWTK DTRLGRVRDSGEFTAKENLKLAVASRYKDLCRNIIKISARAAESEDAFQFALRQLDELIEGVEKILMLKAEEGQGITSSSTVVNGFESENAEFFLDEEEI EDQGEDNRVDGTKEKESAAPDRHQLKNINEKSCKKKRFQLRQTPSPNTSSCISSPPQARVMTEGQSHNPLLQGLYNFEANQVVQCMYQQQNPVMDHEDNP NMYQQSVFYADQHVSPTQIPLLQEPLIRSAYHESLTNNALFRQAMDLDLQHPQSSSILLYDHRFRTFDTSYLGLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	2.44	0.8316	PKL.1
AT5G53220			unknown protein		Potri.015G022500 [exp]	4.89	0.8237
AT1G21730			P-loop containing nucleoside t...		Potri.002G081300 [exp]	5.09	0.8441
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	6.00	0.8327
AT3G14470			NB-ARC domain-containing disea...		Potri.001G029300 [exp]	7.48	0.8278
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	8.94	0.8317
AT4G15890			binding (.1)		Potri.010G013300 [exp]	10.48	0.7671
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.008G073500 [exp]	13.03	0.8209
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.002G046800 [exp]	13.92	0.7485
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	14.07	0.8229

Compare expression of checked genes

Potri.012G137500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.