Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 294 / 2e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 289 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 285 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 284 / 2e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 256 / 7e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 246 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 242 / 2e-77 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 240 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 239 / 3e-76 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71691 232 / 6e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088500 [exp] 454 / 4e-160 AT1G29670 295 / 7e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G137550 [exp] 449 / 6e-160 AT1G29670 187 / 2e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G089400 [exp] 454 / 7e-160 AT1G29660 281 / 2e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G088600 [exp] 452 / 2e-159 AT5G45670 279 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G089200 [exp] 450 / 2e-158 AT1G29660 278 / 6e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G089500 [exp] 444 / 2e-156 AT1G29660 297 / 1e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G088800 [exp] 435 / 1e-152 AT1G29660 293 / 3e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G166800 [exp] 432 / 2e-151 AT5G45670 300 / 9e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G166701 [exp] 426 / 6e-149 AT5G45670 300 / 1e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 306 / 5e-102 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 297 / 2e-98 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 286 / 3e-94 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 282 / 1e-92 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005414 [exp] 281 / 3e-92 AT5G45670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015842 [exp] 280 / 6e-92 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 275 / 2e-89 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011999 [exp] 274 / 2e-89 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 272 / 8e-89 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015241 [exp] 272 / 1e-88 AT5G45670 315 / 1e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.012G137600.1 pacid=42782788 polypeptide=Potri.012G137600.1.p locus=Potri.012G137600 ID=Potri.012G137600.1.v4.1 annot-version=v4.1 ATGGCAGGTGGGCTTAAGACATGGAGGATAATATTGCTGTCTATTTTGTTGGCGCTATCAAACTGGGAACACCGAGCTTGTGGATCATCACCACAAGTGC CTTGTCTCTTCTTGTTTGGAGACTCGTTGTTCGATAATGGGAACAATATGGTTCTTGCAACAGATGTGAAAGCCTCTTATCTACCTTACGGCGTAGACTT TCCTTATGGGTCTACAGGAAGGTGTAGCAATGGACTCAACTTAGCCGACGTGATTGCTGAACAATTAGGTTTCGAAAATTACATTCCACCCTTCGGGACG GGGGACTGCAGGGATTTTATGAATGGTGTAAATTATGCATCTTCTGGAGGTGGCATTCTTGACACGACAGGATCTCTTCTGGGACAACGATACACCATGG ATCTTCAGTTATATTACCACAAGATTATAGTATCACGGATTGCCAAAGAACTGGGGGGTGCGGATGTTGCAAGGAAGTACCTTGGCCACTGCATATATGC TGTTCAAATCGGTTACAATGACTATCTCAACAACTATTTTGCCGAAGGCTACAATAGTAGCAAGATCTACACTCCTGAACAATTTGCACAGCTTCTTGTT CTAACTTATGAAATTCAACTAGAGAGATTGTACAAGGAAGGAGCAAGAAAGATAGCCGTCTTTGGACTTATTCGGATAGGTTGTATGCCATCATACATCC AACTATTTGGCGCAGATGAATCTTCATGTGTAGAAAAACTCAACCATGCAGTTCAACTTTTCAACAATAAGCTTCAAAAAGTGATCGCAAAGCTTAATGC CAACCTTCCTGTTAAATTTACTTACATAAACTCTTACGAAATTGATTCTGAAAATTATACAGATTTAGGTTTCAAAATCACCGATAAGGGCTGTTGTGAA GTTCCTACTGGAAGAATACCGTGTGCACCTCTTACTTATCCATGCCTCAACAGGGATGAGCATGTGTACTGGGACGGAGCCCACTATACTGAAGCTAGAG CTAGGATTTTTGCGAAAAGGGCATATAAACGTCAATTTCCTGTTGATGCACGTCCATACGATATCAGTGAATTAGCTGAGGTCTCAAATGATGAAGCCGA TGGTTGCAGTACGTGTGGCAGTAAAATATTATGA
AA sequence Show only first row Show all	>Potri.012G137600.1 pacid=42782788 polypeptide=Potri.012G137600.1.p locus=Potri.012G137600 ID=Potri.012G137600.1.v4.1 annot-version=v4.1 MAGGLKTWRIILLSILLALSNWEHRACGSSPQVPCLFLFGDSLFDNGNNMVLATDVKASYLPYGVDFPYGSTGRCSNGLNLADVIAEQLGFENYIPPFGT GDCRDFMNGVNYASSGGGILDTTGSLLGQRYTMDLQLYYHKIIVSRIAKELGGADVARKYLGHCIYAVQIGYNDYLNNYFAEGYNSSKIYTPEQFAQLLV LTYEIQLERLYKEGARKIAVFGLIRIGCMPSYIQLFGADESSCVEKLNHAVQLFNNKLQKVIAKLNANLPVKFTYINSYEIDSENYTDLGFKITDKGCCE VPTGRIPCAPLTYPCLNRDEHVYWDGAHYTEARARIFAKRAYKRQFPVDARPYDISELAEVSNDEADGCSTCGSKIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137600 [exp]	0	1
AT4G22592		CPuORF27	conserved peptide upstream ope...		Potri.001G120550 [exp]	2.23	0.8161
					Potri.001G388200 [exp]	5.91	0.8461
AT4G27870			Vacuolar iron transporter (VIT...		Potri.001G127900 [exp]	7.93	0.8204
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	11.22	0.8118	MYB183
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126200 [exp]	17.08	0.8196
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126500 [exp]	17.14	0.7855
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.006G272700 [exp]	17.94	0.7800
AT1G45688			unknown protein		Potri.007G045000 [exp]	18.11	0.7943
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	21.49	0.8134
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248975 [exp]	22.84	0.7838

Compare expression of checked genes

Potri.012G137600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.