Plant FIBer expression Database

Potri.012G138100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G63245 41 / 4e-06 CLE14 CLAVATA3/ESR-RELATED 14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G139900
[exp]
102 / 5e-30 AT1G63245 44 / 3e-07 CLAVATA3/ESR-RELATED 14 (.1)
Potri.003G124000
[exp]
41 / 4e-06 ND /
Potri.012G138200
[exp]
39 / 2e-05 ND /
Potri.015G139966
[exp]
38 / 7e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G138100.1 pacid=42783164 polypeptide=Potri.012G138100.1.p locus=Potri.012G138100 ID=Potri.012G138100.1.v4.1 annot-version=v4.1
ATGAGGACTTATAGCCCTTTACTTTCGCTTCTAGTTTTCAGTACAATCTTGCTAGCCTCGCTCCATTCTTCTACTTGTAGGCATGTCAGCTGGACTACCT
ATGAAGAAAAACAGCAAATTAACACCAAGTATCCTCTTCCATTTCCACAGTATGATCTGCCTGGTATTTCTCACACCGTGAAATCCAAAGATGACAAGGT
CAACAAATTGTTTGGAGGATCTCATAAGGCTGTCCCAGGTGGACCTAATCCACTTCATAATTGA
AA sequence
>Potri.012G138100.1 pacid=42783164 polypeptide=Potri.012G138100.1.p locus=Potri.012G138100 ID=Potri.012G138100.1.v4.1 annot-version=v4.1
MRTYSPLLSLLVFSTILLASLHSSTCRHVSWTTYEEKQQINTKYPLPFPQYDLPGISHTVKSKDDKVNKLFGGSHKAVPGGPNPLHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G63245 CLE14 CLAVATA3/ESR-RELATED 14 (.1) Potri.012G138100
[exp]
0 1
AT4G14550 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic... Potri.005G218300
[exp]
13.49 0.8706 Pt-AUX28.2
AT5G23280 TCP TCP7 TCP family transcription facto... Potri.007G074028
[exp]
14.66 0.8376
AT3G24450 Heavy metal transport/detoxifi... Potri.018G076400
[exp]
17.05 0.8654
AT4G02290 ATGH9B13 glycosyl hydrolase 9B13 (.1) Potri.014G126900
[exp]
19.89 0.8666 Pt-PCEL20.2
AT1G35180 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.005G231600
[exp]
24.81 0.8649
AT4G14305 Peroxisomal membrane 22 kDa (M... Potri.010G068900
[exp]
34.64 0.8583
AT1G29730 Leucine-rich repeat transmembr... Potri.011G072991
[exp]
44.79 0.8532
Potri.003G165300
[exp]
45.51 0.8550
AT1G29450 SAUR-like auxin-responsive pro... Potri.004G181500
[exp]
53.44 0.8509
AT5G10610 CYP81K1 "cytochrome P450, family 81, s... Potri.017G023850
[exp]
55.22 0.8451

Potri.012G138100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.