Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MBD912
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52230 83 / 3e-16 MBD13 methyl-CPG-binding domain protein 13 (.1.2) AT3G46580 54 / 7e-08 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59800 54 / 2e-07 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) AT5G59380 52 / 3e-07 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140100 [exp] 1130 / 0 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.001G240100 [exp] 47 / 2e-05 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 45 / 7e-05 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038869 [exp] 106 / 2e-23 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10014989 [exp] 100 / 2e-21 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10027447 [exp] 64 / 1e-10 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10005888 [exp] 58 / 1e-08 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10005460 [exp] 48 / 5e-06 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10004963 [exp] 49 / 1e-05 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005748 [exp] 47 / 3e-05 ND 36 / 0.009
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G138300.1 pacid=42783814 polypeptide=Potri.012G138300.1.p locus=Potri.012G138300 ID=Potri.012G138300.1.v4.1 annot-version=v4.1 ATGGGGGACCCCAAATCTGATGACTGGTTACCGGAAGGTTGGAGGGTAGAAGTTAAAGTGAGAAATAATGGTAAAAAAGATAAGTTTTACTTTCCTCCCT CGGGTGGATGTAGATTCAACTCCAAGATTGAGGTTTCTCGTTATCTCAACGGCAGCCATCCTAATTCTGAACAAAAGGTTCTAATTGAGAAGACTGTGCC AGAAGGGTTACCTCTGGGATGGACCCAGGAAATCAAAGTGACAAAGAAGGGTGGAAGAATCAGAAGAGACTCGTTGTATACTGACCCTGTTAGCGGGTAT GTTTTCCGCTCCATGAAGGATGCATGTCGCTACATTGAAAGTGGTGTCGTAGGAAGGCTGGCATTCAAGCGAAACGATAGAGAAAACCATGATGTAGAGT TGGAAGATGATAAAACTTTTTCACCAGCTGTAGCTGAGAAAGAAGGGTCGGAAGTCCATGAAAAACAGAATCCAGTTATAGGTGACCAGAGCTTGAAGTC ATGTGAAATTGCTAAAGATGATCAGACACTCACTTCAGTCTCTACAGGAGAGTGCATAACTGGCTCTGAACGTACATCTGATCAGTTTATGTCTGTAGCC AAGAGACAAAATGTGGAAGTCAACAGAGTACCAAGTCCAATTGTCAGTGACCAGAGCCTGAAGTCTTTCGAAATAGCTAAAGATGAACAGACACTTAATT CAGCCTCAGCAGGGGAATGCACAACTGTCTCCGACCATGCTTCTGATCAGTGCGTCTCCATAGCCAAGAAACAAAAGTTGGAGGTCGATGGAACATCAAG TCAAATTGTAAGTGACCAGACCTTGAAGTCATGTGAAATTGCTAAAGATGAACAGGTACTTGATTCAGCCTCTACAGGAGAATGCACAGCTATCTCGAAG CGTACTTCTGATCAGTTTGTCTCTGTAATCAAGAAGCAAAAACTGGCTGTCAACAGAACACCTAGTTCTATTATAAGTGACCAGAGCTTGAAGTTGGGTG GAATTGTTAAGGATGAACAGATACTAAATTCAGCCTCTGCAGGAGAATGCACAATTCTCTCCAAGCATACTTCTGGTCAGTGTGGAGTAGGAACAGAATC AAGCAGCTCAGAATTTCTTGAGGATAAGGGTTCCAACCAAACAGAAGAGAAGAGTGATTCTGTTAAGGCTGAAGATCCTTTGCAAGCTGTTCTACAGGAT AAACCATCAGTGGAAGTTGGGGAGACAAAAAAGGAAAGTAAAAAGACTGGAGTTAGAAAATCCAGGAAGAAAACTGATCTTAACCTTCCTCGTCGGGCCT CGAAGCGTCTTGCTGGCATTCCACTAGCTCCAACACCAGAACTGAAGGCAGCAACTCGGGCTCGTCGAGCTGCACTTGAACCAAGTAATGAGATCGTTGC TAGTACAAGTGAGCAGGCTTCTTGTGGTGACCCTGATACTGAGCTGAATACAAAGCATGCATTTGAATCCTCCAAAAGCACAGAAATACCGGTGGATTCA AATGAGAGCAAACATGCTATTGTGGATGTGGAGCATGCTGGAAAGGCAGGATCAGGAAAGCAGGGGGACAAGAAGCATCAATATGATGTTGCTTCCCCTC CTGGGAACCTCGCCACTGGAGAACATGCTGGAAAGATTGAAACTTACAGTACTGGTGATGAGAAGCAAGGACTGCCATTTGACCTGCCACTTGAGGAGTT ATGGCAAGACCCATGCATTGCCTTTGCAATAAAAACTCTCACTGGAACATCCGTTGATGATTCTGATAGCATTAAAGTGTCACCAGGATCAAGCAACAAT GAATTTGTGGGCATGGCTACTTTGGACAACCATGCTGGCAAGGAAGACATTGGGAATAATGGAAATCTGTCTATTCTAGAGGAACATGCTAGAGCGGTTG GAACTAGCAATAAGTCTGATGAGAAGCCAGTATCTCCTCTCGTCTTACCTTTTGCAGATGCATGGTCAGACCCCTGCATCGAATTTGCAATAAAAACTCT CACTGGTGCTCTTCCATTGGACTTTGATATGGTTCAGGATTACCTTCCGCCGCAAGTTAGGTCTTCGCAGCCGCAAGAAAGTAGAGGCTTCACCTTGCCA AATGTAGGTGAGTTTCGCCAAACTGAATTTTTGTGCCAGCAATTTGGCACTTCAGAGAAGCCATCATTTAATCAAGCAGCTTTGGTAGGGCCTGCATTGC CACACACTAAACATGTTAATTTAGGATACGCAGCTGCAGCTGGACCTAGTCGACGCCTACATAGTGAAGAGAGAAGCAATAAACGTCGAAGATAA
AA sequence Show only first row Show all	>Potri.012G138300.1 pacid=42783814 polypeptide=Potri.012G138300.1.p locus=Potri.012G138300 ID=Potri.012G138300.1.v4.1 annot-version=v4.1 MGDPKSDDWLPEGWRVEVKVRNNGKKDKFYFPPSGGCRFNSKIEVSRYLNGSHPNSEQKVLIEKTVPEGLPLGWTQEIKVTKKGGRIRRDSLYTDPVSGY VFRSMKDACRYIESGVVGRLAFKRNDRENHDVELEDDKTFSPAVAEKEGSEVHEKQNPVIGDQSLKSCEIAKDDQTLTSVSTGECITGSERTSDQFMSVA KRQNVEVNRVPSPIVSDQSLKSFEIAKDEQTLNSASAGECTTVSDHASDQCVSIAKKQKLEVDGTSSQIVSDQTLKSCEIAKDEQVLDSASTGECTAISK RTSDQFVSVIKKQKLAVNRTPSSIISDQSLKLGGIVKDEQILNSASAGECTILSKHTSGQCGVGTESSSSEFLEDKGSNQTEEKSDSVKAEDPLQAVLQD KPSVEVGETKKESKKTGVRKSRKKTDLNLPRRASKRLAGIPLAPTPELKAATRARRAALEPSNEIVASTSEQASCGDPDTELNTKHAFESSKSTEIPVDS NESKHAIVDVEHAGKAGSGKQGDKKHQYDVASPPGNLATGEHAGKIETYSTGDEKQGLPFDLPLEELWQDPCIAFAIKTLTGTSVDDSDSIKVSPGSSNN EFVGMATLDNHAGKEDIGNNGNLSILEEHARAVGTSNKSDEKPVSPLVLPFADAWSDPCIEFAIKTLTGALPLDFDMVQDYLPPQVRSSQPQESRGFTLP NVGEFRQTEFLCQQFGTSEKPSFNQAALVGPALPHTKHVNLGYAAAAGPSRRLHSEERSNKRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.012G138300 [exp]	0	1	MBD912
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.017G094400 [exp]	1.73	0.7978
AT4G34280			transducin family protein / WD...		Potri.007G051500 [exp]	2.82	0.7851
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	4.89	0.7832	Pt-CNGC.2
AT5G61010		ATEXO70E2	exocyst subunit exo70 family p...		Potri.015G058200 [exp]	9.21	0.7352
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	9.79	0.7469
AT5G53220			unknown protein		Potri.015G022500 [exp]	10.67	0.7711
AT3G04470			Ankyrin repeat family protein ...		Potri.019G019700 [exp]	10.81	0.7463
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.018G023000 [exp]	12.12	0.7663
AT1G33050			unknown protein		Potri.001G452300 [exp]	13.56	0.7807
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	14.49	0.7529

Compare expression of checked genes

Potri.012G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.