Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 348 / 7e-124 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT2G15310 126 / 2e-36 ATARFB1A ADP-ribosylation factor B1A (.1) AT5G14670 124 / 6e-36 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 124 / 6e-36 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 124 / 6e-36 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 124 / 6e-36 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 124 / 8e-36 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 124 / 1e-35 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G24765 120 / 3e-34 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G67560 118 / 2e-33 ATARLA1D ADP-ribosylation factor-like A1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140400 [exp] 386 / 5e-139 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 127 / 7e-37 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 125 / 4e-36 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 125 / 4e-36 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 125 / 4e-36 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 125 / 4e-36 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 125 / 4e-36 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 125 / 4e-36 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 124 / 7e-36 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005749 [exp] 369 / 5e-132 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 352 / 1e-123 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10014991 [exp] 346 / 8e-123 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10027446 [exp] 338 / 7e-120 AT5G52210 314 / 1e-110 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 125 / 4e-36 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 125 / 7e-36 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 125 / 8e-36 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 125 / 6e-35 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10026383 [exp] 121 / 1e-34 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10029144 [exp] 125 / 6e-34 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.012G138500.2 pacid=42784346 polypeptide=Potri.012G138500.2.p locus=Potri.012G138500 ID=Potri.012G138500.2.v4.1 annot-version=v4.1 ATGTTCTCGTTGTTTTATGGCCTTTGGAAGTATATATTTAGTAAGACAGAGTTTCATGTGCTCATTCTTGGAATCGACAAGGCTGGGAAGACGACATTGC TGGAGAAATTGAAGTCAGTGCACTCGAACTTGGAAGGCCTCCCTCCTGATCGAATTATTCCTACTGTTGGACTAAATATTGGTCGTATTGAAGTGGCAAA TTCAAAACTGGTGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAGAAATATTACGAAGAGGCACATGCTGTGATTTATGTAATTGAT GCTGCTTGCCCATCACGTTTTGAAGATGCAAAATCTGCGTTGGAAAAGGTTCTTAGGCACGATGATCTGCAGGGAGCCCCCCTTTTGATATTAGCAAACA AGCAGGATCTTACTGATGCTGCATCAGCAGAAGAGCTTGCTCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATTTTCGAAGCTGTTTCAGC ATATGATGGGATGGGGATCAAAGAAAGTGTAGAATGGCTCGTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCTGGTGTAACT GGCCCTGGTGCTTAG
AA sequence Show only first row Show all	>Potri.012G138500.2 pacid=42784346 polypeptide=Potri.012G138500.2.p locus=Potri.012G138500 ID=Potri.012G138500.2.v4.1 annot-version=v4.1 MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNIGRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVID AACPSRFEDAKSALEKVLRHDDLQGAPLLILANKQDLTDAASAEELARYLDLKKLDERVYIFEAVSAYDGMGIKESVEWLVEVMERSKRTEMLRARAGVT GPGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Potri.012G138500 [exp]	0	1
AT4G28088			Low temperature and salt respo...		Potri.006G182500 [exp]	2.44	0.9300
AT4G16566		HINT4	histidine triad nucleotide-bin...		Potri.003G076400 [exp]	4.79	0.8972
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	6.00	0.9276
AT5G49540			Rab5-interacting family protei...		Potri.010G148600 [exp]	6.32	0.9118
AT1G51160			SNARE-like superfamily protein...		Potri.017G149900 [exp]	9.16	0.9210
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.004G156900 [exp]	10.24	0.9157	Pt-RER1.2
AT1G47830			SNARE-like superfamily protein...		Potri.002G022900 [exp]	11.66	0.9207
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	11.66	0.9155
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.005G235300 [exp]	12.40	0.9096
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.005G067700 [exp]	13.71	0.8824	ATHDH.2

Compare expression of checked genes

Potri.012G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.