Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EMS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07280 1374 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 587 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 561 / 9e-180 Leucine-rich repeat protein kinase family protein (.1) AT5G44700 563 / 4e-179 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G01950 556 / 1e-177 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 550 / 4e-175 BRL1 BRI1 like (.1.2) AT4G39400 537 / 1e-169 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 528 / 1e-166 BRL3 BRI1-like 3 (.1) AT1G17230 521 / 8e-165 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 508 / 2e-159 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141200 [exp] 2169 / 0 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G101100 [exp] 576 / 0 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G169600 [exp] 570 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 570 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.003G156200 [exp] 568 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 566 / 3e-180 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G472900 [exp] 560 / 4e-178 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 534 / 2e-168 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G086500 [exp] 528 / 3e-166 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038875 [exp] 1391 / 0 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 1376 / 0 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 557 / 1e-176 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033533 [exp] 555 / 2e-176 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 542 / 2e-171 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 531 / 8e-168 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006817 [exp] 528 / 3e-166 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038392 [exp] 527 / 9e-166 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039132 [exp] 524 / 4e-165 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10005784 [exp] 520 / 1e-163 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.012G139000.1 pacid=42783146 polypeptide=Potri.012G139000.1.p locus=Potri.012G139000 ID=Potri.012G139000.1.v4.1 annot-version=v4.1 ATGGCAATTTTCTTCAAGCTTGTGTTTTTTTGCCTTCTAGTGTTGACACAGTCTCTCGTCTTGGTTTCAAAGTACACCGAAGATCAAAACACTGATAGGA AGTCTCTTATTTCCTTCAAAAATGCACTAAAAACCCCAAAAGTCCTTTCTTCATGGAACACAACGAGCCACCATTGTAGCTGGGTTGGCGTTTCTTGCCA ACTCGGCCGAGTTGTTTCATTGATTCTGTCTGCTCAGGGCCTTGAAGGCCCACTCTACTCTTCTCTTTTCGATCTTTCTTCCTTAACCGTCTTTGATTTG TCCTATAACCTTCTTTTTGGTGAAGTCCCTCATCAAATTTCAAACCTTAAACGATTGAAACACCTTTCTCTAGGTGATAACCTTCTATCAGGCGAGTTAC CGAGCGAGCTCGGTCTGCTGACTCAGCTCCAAACCCTACAACTCGGTCCCAACTCGTTCGCCGGGAAAATTCCTCCGGAGCTTGGGAGGTTATCCCAGCT CAATACTCTTGACCTCTCAAGCAATGGGTTCACCGGGTCAGTGCCGAATCAACTCGGTAAGTTGACTGGGCTTCAGTTATTGGACCTTGGCAACAACCTC CTGTCAGGTTCTCCTGTAACGCTCTTTAAACTTGAATCTTTAACATCCTTGGATATATCAAACAATTCCTTTTCTGGTCCAATCCCACCTGAAATAGGCA ACCTTAAAAACCTTTCTGATCTTTACATTGGTGTCAACTTGTTTTCTGGTCCTTTGCCACCACAAATTGGTGACCTTTCAAGACTTGTGAACTTCTTTGC ACCTTCATGTGCAATCACTGGTCCTTTGCCTGAAGAAATTTCCAATTTGAAGTCACTAAGTAAACTTGACCTTTCATACAATCCATTGAAGTGTTCAATA CCAAAGTCTGTTGGTAAAATGGAAAGCTTGTCAATATTGTATCTTGTTTACTCTGAGCTTAATGGCTCTATACCTGCAGAACTTGGAAATTGCAAAAACT TGAAAACTTTGATGTTGTCTTTCAATTCTCTGTCTGGGGTTTTACCAGAAGAGCTTTCTATGTTGCCTATGTTGACATTTTCTGCTGATAAGAATCAACT TTCTGGGCCATTGCCTGCTTGGCTTGGAAAGTGGAACCAAGTGGAATCACTTTTGCTTTCAAATAATAGATTTACGGGGAAAATTCCAGCTGAAGTTGGG AATTGCACGGCGTTGAGGGTGATTAGTTTGAGTAGTAACATGCTGAGTGGGGAGATACCAAGAGAGCTTTGTAATCCTGTTGAACTTATGGAGATTGATC TTGATGGGAACTTCCTGGCTGGTGATATTGAGGATGTGTTTTTGAAGTGTACTAATTTGAGTCAGTTGGTTTTGATGAATAATCAGATTAATGGATCAAT TCCGGAGTACTTAGCAGAGCTTCCTTTAATGGTGCTTGATCTTGATTCCAACAATTTCTCGGGTACCATACCTTTGAGTTTATGGAACTCCCTGAACCTG ATGGAATTCTCTGCTGCTAATAATTTCTTGGAGGGTTCTCTGCCTGCGGAGATTGGCAATGCTGTTCAGTTGGAGAGGCTGGTGCTTAGCAACAATCAAT TAGGGGGTACTATCCCTAAGGAGATAGGCAATCTCACAGCTCTTTCAGTGCTCAACTTGAACTCTAATCTGTTTGAAGGGAACATTCCTGTGGAGCTAGG ACATTCTGTTGCACTCACCACATTGGACCTGGGAAATAATCAACTTTGTGGATCAATACCGGAGAAACTTGCAGATTTGGTTCAATTACATTGCTTGGTT CTTTCTCACAATAAGTTATCAGGGTCCATTCCATCGAAGCCGTCTTTGTATTTTCGTGAAGCTAGCATTCCTGATTCAAGCTTCTTTCAACACCTTGGCG TGTTTGATTTGTCACACAATATGTTGTCTGGTTCAATACCTGAGGAGATGGGGAACCTCATGTTTGTAGTGGATCTTTTACTTAACAATAACAAGCTTGC CGGTGAAATGCCTGGATCACTTTCAAGGTTGACAAATCTTACAACCTTGGATTTGTCTGGAAATATGTTAACCGGCTCCATTCCACCAGAACTCGTTGAT TCTTCCAAGCTTCAGGGCCTGTATCTGGGAAATAATCAGCTCACTGGAACCATCCCTGGGAGATTAGGTGTTCTGTGCAGCTTGGTGAAGCTGAATTTGA CTGGTAATCAGTTGCATGGTCCAGTTCCTCGTAGTCTTGGAGACTTGAAAGCGCTTACTCACTTAGATTTGAGCTATAATGAGCTTGATGGTGAGCTCCC TTCTTCTGTATCGCAAATGCTGAATCTTGTGGGGCTTTATGTTCAGCAGAACCGGCTATCTGGGCCTTTAGATGAGCTCCTATCAAGTTCCATGGCATGG AAGATTGAAACTATGGATTTGAGTAATAATTTCTTTGATGGAAACTTGCCGCGATCATTTGGAAACCTTTCATACTTGACATATTTGGATCTTCATGGAA ATAAATTCACAGGAACCGTTCCTGTAGAGCTTGGGAATTTGATGCAACTCGAATATTTTGATGTTTCAGGGAATAGGTTATCAGGGAAAATTCCAGAGAA TATATGTGTCCTGGTTAATCTGTTTTATTTGAATTTGGCAGAAAACAGTTTAGAAGGACCAGTACCGAGAAGTGGTATATGTCTAAACCTGTCAAAAATT TCTCTCGCTGGCAACAAAGATCTCTGTGGGAGAATCTTGGGTTTAGATTGCAGGATCAAAAGCTTTAACAAGTCGTATTTTTTGAATGCTTGGGGACTTG CTGGGATTGCGGTTGGATGTATGATTGTCGCTCTTAGTACAGCCTTTGCTCTGCGGAAATGGATCATGAGAGACAGCGGGCAAGGTGATCCTGAGGAAAT TGAGGAAAGAAAACTGAACAGTTTTATTGATAAAAACTTGTACTTCTTGAGCAGCAGCAGATCGAAGGAACCTCTGAGTATCAACATAGCCATGTTTGAG CAGCCTCTTCTGAAAATAACATTAGTTGATATTCTTGAAGCCACCAACAACTTTTGCAAGACGAACATCATTGGAGATGGAGGTTTTGGTACTGTATACA AGGCCACTCTACGTGATGGAAAGACAGTTGCGGTCAAGAAGCTGAGCCAAGCCAAGACACAAGGTGACCGAGAATTTATAGCTGAAATGGAAACGTTGGG GAAGGTTAAGCATCAGAATCTTGTCGCATTGCTCGGATATTGTTCTTTGGGGGAGGAAAAGCTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGAT CTCTGGCTAAGAAATCGAAGCGGGGCTCTTGATGTCCTTGATTGGCCAAAGCGCTTCAAGATTGCAACTGGTGCAGCATGTGGGCTAGCTTTTCTCCACC ATGGATTCACCCCCCACATCATTCACAGGGACATCAAGGCCAGCAACATCCTACTTAATGAGAATTTCGAGCCCAGGGTTGCTGATTTTGGCCTGGCCAG ATTGATCAGTGCTTGTGAAACTCATGTTAGCACTGACATAGCGGGTACATTTGGCTACATACCACCAGAGTATGGTCAGAGCGGGAGGTCCACTTCAAGA GGAGATGTTTATAGCTTTGGTGTAATTCTTCTTGAATTGGTGACCGGGAAAGAGCCAACAGGACCAGATTTCAAAGAGGTTGAAGGGGGGAACCTAGTTG GTTGGGTGTCTCAAAAGATTAAGAAGGGGCAGACTGCTGATGTTCTTGATCCAACAGTTCTTAGTGCAGATTCCAAGCCAATGATGCTTCAAGTGCTGCA GATTGCTGCTGTTTGCCTGTCTGACAATCCAGCAAACAGACCTACTATGCTTAAAGTGTTGAAGTTCCTGAAAGGGATCAGAGATGAGTAG
AA sequence Show only first row Show all	>Potri.012G139000.1 pacid=42783146 polypeptide=Potri.012G139000.1.p locus=Potri.012G139000 ID=Potri.012G139000.1.v4.1 annot-version=v4.1 MAIFFKLVFFCLLVLTQSLVLVSKYTEDQNTDRKSLISFKNALKTPKVLSSWNTTSHHCSWVGVSCQLGRVVSLILSAQGLEGPLYSSLFDLSSLTVFDL SYNLLFGEVPHQISNLKRLKHLSLGDNLLSGELPSELGLLTQLQTLQLGPNSFAGKIPPELGRLSQLNTLDLSSNGFTGSVPNQLGKLTGLQLLDLGNNL LSGSPVTLFKLESLTSLDISNNSFSGPIPPEIGNLKNLSDLYIGVNLFSGPLPPQIGDLSRLVNFFAPSCAITGPLPEEISNLKSLSKLDLSYNPLKCSI PKSVGKMESLSILYLVYSELNGSIPAELGNCKNLKTLMLSFNSLSGVLPEELSMLPMLTFSADKNQLSGPLPAWLGKWNQVESLLLSNNRFTGKIPAEVG NCTALRVISLSSNMLSGEIPRELCNPVELMEIDLDGNFLAGDIEDVFLKCTNLSQLVLMNNQINGSIPEYLAELPLMVLDLDSNNFSGTIPLSLWNSLNL MEFSAANNFLEGSLPAEIGNAVQLERLVLSNNQLGGTIPKEIGNLTALSVLNLNSNLFEGNIPVELGHSVALTTLDLGNNQLCGSIPEKLADLVQLHCLV LSHNKLSGSIPSKPSLYFREASIPDSSFFQHLGVFDLSHNMLSGSIPEEMGNLMFVVDLLLNNNKLAGEMPGSLSRLTNLTTLDLSGNMLTGSIPPELVD SSKLQGLYLGNNQLTGTIPGRLGVLCSLVKLNLTGNQLHGPVPRSLGDLKALTHLDLSYNELDGELPSSVSQMLNLVGLYVQQNRLSGPLDELLSSSMAW KIETMDLSNNFFDGNLPRSFGNLSYLTYLDLHGNKFTGTVPVELGNLMQLEYFDVSGNRLSGKIPENICVLVNLFYLNLAENSLEGPVPRSGICLNLSKI SLAGNKDLCGRILGLDCRIKSFNKSYFLNAWGLAGIAVGCMIVALSTAFALRKWIMRDSGQGDPEEIEERKLNSFIDKNLYFLSSSRSKEPLSINIAMFE QPLLKITLVDILEATNNFCKTNIIGDGGFGTVYKATLRDGKTVAVKKLSQAKTQGDREFIAEMETLGKVKHQNLVALLGYCSLGEEKLLVYEYMVNGSLD LWLRNRSGALDVLDWPKRFKIATGAACGLAFLHHGFTPHIIHRDIKASNILLNENFEPRVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTSR GDVYSFGVILLELVTGKEPTGPDFKEVEGGNLVGWVSQKIKKGQTADVLDPTVLSADSKPMMLQVLQIAAVCLSDNPANRPTMLKVLKFLKGIRDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.012G139000 [exp]	0	1	EMS1.2
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	2.00	0.8362
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	5.91	0.8046
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	17.86	0.7550
AT3G07350			Protein of unknown function (D...		Potri.009G144600 [exp]	20.54	0.8191
AT3G14470			NB-ARC domain-containing disea...		Potri.018G003502 [exp]	25.78	0.7319
AT5G20170			RNA polymerase II transcriptio...		Potri.015G057100 [exp]	30.82	0.6979
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	31.11	0.7012	NTR1.4
AT1G28760			Uncharacterized conserved prot...		Potri.019G039300 [exp]	42.19	0.6641
AT3G16560			Protein phosphatase 2C family ...		Potri.003G159600 [exp]	46.43	0.7449
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	53.72	0.7229

Compare expression of checked genes

Potri.012G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.