Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07270 783 / 0 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G57740 421 / 7e-143 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G28840 143 / 2e-37 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G60070 74 / 1e-13 ankyrin repeat family protein (.1) AT4G19150 69 / 5e-13 Ankyrin repeat family protein (.1.2) AT1G07710 69 / 3e-12 Ankyrin repeat family protein (.1) AT3G04710 69 / 3e-12 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G31820 69 / 5e-12 Ankyrin repeat family protein (.1) AT5G02620 66 / 3e-11 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 63 / 3e-10 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141400 [exp] 963 / 0 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 464 / 8e-160 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 446 / 4e-153 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.001G238800 [exp] 154 / 3e-41 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.009G030000 [exp] 140 / 2e-36 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G185200 [exp] 74 / 9e-14 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 72 / 4e-13 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 65 / 5e-11 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 65 / 6e-11 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005754 [exp] 789 / 0 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 755 / 0 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10019974 [exp] 453 / 2e-155 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015503 [exp] 449 / 4e-153 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10016561 [exp] 149 / 1e-39 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 106 / 9e-25 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10003260 [exp] 71 / 6e-13 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003748 [exp] 68 / 8e-12 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10006559 [exp] 64 / 2e-10 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10036033 [exp] 58 / 1e-09 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.012G139100.1 pacid=42782643 polypeptide=Potri.012G139100.1.p locus=Potri.012G139100 ID=Potri.012G139100.1.v4.1 annot-version=v4.1 ATGGGGAATTCATTTGGGTGCTCAGCTTCAGGGGAGAGGTTAGTTTCAGCAGCAAGAGATGGAGATTTGGTGGAAGCCAAGATGTTATTGGATTGTAATC CTTGTCTAGCTAAATATTCAACTTTTGGGGGCCTTAATTCTCCTCTCCATTTTGCTGCTGCTAAAGGCCACAATGAGATTGTGGGGTTGTTGTTAGAGAA TGGAGCTGATGTGAATTCCAGGAATTACTGTGGCCAGACGGCATTGATGCAAGCTTGTAGATATGGACATTGGGAAGTTGTGCAGACACTTCTATTGTTT AGGTGCAATGTTACAAGGGCGGATTATCTTAATGGAAGGACTGCTCTACACTTTGCAGCTGTAAATGGGCATGCAAGATGTATAAGATTAGTTGTAGCAG ATTTTGTTCCTAGTGCCCCTTTTGAAGCTATGCATGCTCGGATAGAAGGTGATACTGGGGATGGTTCTAGTGAGAAGAACAGATTTGACCAGAGTGCGTT GTCCAGGTTTGTAAATAAGGCGGCTGATGGTGGTATCACTGCTCTTCACATGGTTGCATTGAATGGGTATTTTGATTGTGTACAGCTTCTACTTGATATT CATGCAAATGTATCATCAGAGACATTTCATTATGGGACAACGATGGATTTGATAGGGGCTGGAAGCACCCCCTTGCATTATGCTGCCTGTGGGGGCAATT TAAAATGCTGTCAGATCCTTCTTGCAAGAGGTGCCAGTCGGACGACATTAAATTGCAACGGGTGGCTGCCTGTTGATGTTGCTAGGATGTGGGGGCGTCA TTGGCTTGAACCATTGTTGGCAACAAATTCTGAATCTACAATACCTAGATTTCCTCACTCTAATTACTTAGCCTTGCCTCTTTTGAGTGTACTTAACATA GCAAGAGAGAGTGGGCTGCAATGCTCGACAAGGTCCTCTGATGACCCTGATATTTGCGCTGTTTGCCTGGAGAGAGCATGCAATGTGGCCGCGGAAGGGT GCAGGCATGAGCTTTGTGTAAGATGCGCACTCTGCCTGTGCTCAACATGCAATATCTCATCCGAAATGGTAGGCCCTACTGGCTCCATCCCATGTCCTCT TTGCAGGCATGGCATTGTCTCTTTTGATAGACTGCCTGGTTCCTCGGCAAAGGAAATGAAGCTTCCTCTGTCTCTAGGCCTCTGTGCTCCATGCATGCTT CATCCTCGTGACATGGATGGGAAATCGCTAGCATGTTTACCAGAGGTCCGAAAGAATCGAGTGGCTTCAGTTTCTTCTGATTTTCTTTGCCCAGTCACTT GCAGCCCATTTCCTTCTGTTGCCATCCCTTTATGTACCTGCAATGATGAACCATGCCCATCTCTTGAAACCCAAGAGGCTGAATCACAAGATGAATCCTC TCACCGTTCGCAAACATCTGTAGAGCAGGTTAAAGTGGAAGGGCCAAGGCTTGAGAAAACAAGCTGTTCGAGTATGTTTTGGGGTAGAAGGAGCTGCAGC AGAGAGCATCAGTGCACTTCAGAAATAAATGCATGA
AA sequence Show only first row Show all	>Potri.012G139100.1 pacid=42782643 polypeptide=Potri.012G139100.1.p locus=Potri.012G139100 ID=Potri.012G139100.1.v4.1 annot-version=v4.1 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLF RCNVTRADYLNGRTALHFAAVNGHARCIRLVVADFVPSAPFEAMHARIEGDTGDGSSEKNRFDQSALSRFVNKAADGGITALHMVALNGYFDCVQLLLDI HANVSSETFHYGTTMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTTLNCNGWLPVDVARMWGRHWLEPLLATNSESTIPRFPHSNYLALPLLSVLNI ARESGLQCSTRSSDDPDICAVCLERACNVAAEGCRHELCVRCALCLCSTCNISSEMVGPTGSIPCPLCRHGIVSFDRLPGSSAKEMKLPLSLGLCAPCML HPRDMDGKSLACLPEVRKNRVASVSSDFLCPVTCSPFPSVAIPLCTCNDEPCPSLETQEAESQDESSHRSQTSVEQVKVEGPRLEKTSCSSMFWGRRSCS REHQCTSEINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.012G139100 [exp]	0	1
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	10.04	0.8487	Pt-CPK7.2,CPK14
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	15.93	0.8465
AT5G22400			Rho GTPase activating protein ...		Potri.004G201600 [exp]	18.54	0.8239
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	18.97	0.8224
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	30.33	0.8133
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	32.07	0.8176
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.003G192900 [exp]	32.63	0.8093
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Potri.002G034600 [exp]	39.11	0.7901
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	43.05	0.8147
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.004G050150 [exp]	44.73	0.7821

Compare expression of checked genes

Potri.012G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.