Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00730 838 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT3G61150 797 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 717 / 0 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 706 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 683 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 670 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 565 / 0 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 529 / 2e-179 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 509 / 4e-171 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G79840 504 / 6e-169 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141800 [exp] 1350 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 936 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 908 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 700 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 699 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 680 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 668 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G034100 [exp] 594 / 0 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.003G052400 [exp] 577 / 0 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036567 [exp] 798 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 769 / 0 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 757 / 0 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10006765 [exp] 684 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 675 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 665 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027175 [exp] 650 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 649 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031321 [exp] 611 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10014997 [exp] 567 / 0 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.012G139300.1 pacid=42783125 polypeptide=Potri.012G139300.1.p locus=Potri.012G139300 ID=Potri.012G139300.1.v4.1 annot-version=v4.1 ATGGATGGTCGTGGTGATATGGGTCTGTTTGGGGAACATTTTGATCCTTGTTTGGTAGGGAGGATCAAGGAGGATGGTTATGAGAGCAGGTCTGGTAGTG ATAACATTGAAGGAGCATCTGGTGAAGATCAGGATGTTGGAGACGATCAAAGGCCTAGGAAGAAGTACAACAGACACACTGCTAATCAAATACAAGAGCT TGAATCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGATCAGAGCTTAGCAGGAGGCTTGGCTTGGAAAGCAAGCAAATCAAGTTTTGGTTT CAAAATAGGAGAACTCAAATGAAGACCCAATTGGAACGGCATGAGAATGTAATCCTCAGGCAAGATAATGATAAACTCCGACTTGAGAATGAGTTGTTGA AACAAAACATGAGTGATCCAATTTGCAACAATTGTGGTGGTCCTGTGGTGCCTGGTCCAGTGTCTGATGAGCAACAGCAGTTAAGGATCGAAAATGCTCG ATTGACGGATGAATTAGGTCGTGTTTGTGCCTTGGCCAATAAGTTTTTAGGCAGACCCCTCACATCCTCAGCCAATCCTATCCCTCCGTTTAGCACAAAC TCCAAGTTGGACCTTGCAGTTGGGATAAATGGATATGGCAATTTAGGCCATACAGACAACATGTTGCCAATGGGGCTTGATAATAATAGAGGGATTATGA TGCCTCTGATGAAACCAATAGGCAATGCTGTTGGCAAGGAAGTACCACATGATAGATCAATATTTGTAGATCTTGCACTTGCTGCTATGGATGAATTGAT AAAGATGGCTCAGATTGAAAGTCCCATTTGGATCAAAAGCTTAGATGGAGGAAAGGAAGTCCTGAACCATGAGGAGTATACGAGGACTTTTCCTCGCATT GGCATGAAACCCAGCAATTTTGTTACTGAGGCTACACGGGTGAGTGGTGTAGTACTCGTCAACATCTCGGCTCTAGTTGAGACATTGATGGACGTGAATG GATGGGTGGAGATGTTTCCCAGCTTGATTGCTAGAGCTGCCACCACTGATATCATATCAAGTGGCATGGGTGGAACAAAAAGTGGAGCTTTGCAAATGAT ACACGCCGAGTTTCAATTGATTTCGCCTTTTGTCCCTGTGCGTCAAGTGAAGTTCCTTCGGTTATGCAAGCAACTCACGGAGGGTGTGTGGGCTGTAGTT GATGTTTCCATTGATGCAAACCAGGAAAATCTAAATGCACAAGCCCCTGTAACCTGCAAGAGGCTTCCTTCTGGCTGCATTATACAAGATATGAACAATG GTTGCTCTAAGGTTACATGGGTGGAACATTCCGAATATGATGAGAGTGCAGTCCATCAACTCTACCGACCCATACTTAGTTCTGGCAGGGGCTTTGGTGC ACAGAGGTGGCTTGCTGCCCTTCAACGGTATTACGAGGGCATGGCAATGATTATGTCTCCTAGCATTTTGGGTGAAGATCAGACAGTGATAAATCTGGGA GGTAAGAAAAGCATGTTAAAGTTAGCACGACGAATGGTGGATAACTTCTGTTCTGGGGTTTGTGCTTCTTCTTTGCACAATTGGGGCAACCTTGTGGCTG GAAATGTGAGTGAAGATGTGAGGATTTTGACCCGAAAGAGTATTAATGAACCTGGTGAGCCAGATGGTATTGTGTTGAGTGCTGCGACTTCTGTTTGGCT GCCAGTTTCACGACAAAGGTTATTTGACTTCTTGAGGGATGAACAATCAAGGAGCCATTGGGACATTTTATCCAATGGTGGAATGTTGCAGGAGATTATC CAAATCCCCAAGGGACAGGGACAATGCAACCGTGTCTCTCTCCTGCGTTCAACTGCTGTTGATGCTGATGCGGGTGAGAACAACATGTTAATATTACAAG AAACCAGGAATGATGTCTCAGGTTCGCAAGTAGTGTATGCACCAGTCGACATACAATCGATGAGTGTAGTGACGTCTGGTGGAGACTCTACCTATGTGGC TCTCCTGCCATCAGGGTTTGTGATTCTTCCAGATAATTCATTTAGTAATGGTGAGCCCAGCAACAGCGATGGGAATCCAGTCAAAAGAGATAGCGATAGC AACAATGGAGGTGGATCGTTTTTTACTGTCGGATTCCAAATTTTGGCGAGCAACCTTCCTTCAGCCAAACTTACAGTCGAGTCAGTCGAGACGATTCATA ATCTCATCTCCTGCACAATGCAGAGGATCAGAACAGCCTTCAACTAA
AA sequence Show only first row Show all	>Potri.012G139300.1 pacid=42783125 polypeptide=Potri.012G139300.1.p locus=Potri.012G139300 ID=Potri.012G139300.1.v4.1 annot-version=v4.1 MDGRGDMGLFGEHFDPCLVGRIKEDGYESRSGSDNIEGASGEDQDVGDDQRPRKKYNRHTANQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWF QNRRTQMKTQLERHENVILRQDNDKLRLENELLKQNMSDPICNNCGGPVVPGPVSDEQQQLRIENARLTDELGRVCALANKFLGRPLTSSANPIPPFSTN SKLDLAVGINGYGNLGHTDNMLPMGLDNNRGIMMPLMKPIGNAVGKEVPHDRSIFVDLALAAMDELIKMAQIESPIWIKSLDGGKEVLNHEEYTRTFPRI GMKPSNFVTEATRVSGVVLVNISALVETLMDVNGWVEMFPSLIARAATTDIISSGMGGTKSGALQMIHAEFQLISPFVPVRQVKFLRLCKQLTEGVWAVV DVSIDANQENLNAQAPVTCKRLPSGCIIQDMNNGCSKVTWVEHSEYDESAVHQLYRPILSSGRGFGAQRWLAALQRYYEGMAMIMSPSILGEDQTVINLG GKKSMLKLARRMVDNFCSGVCASSLHNWGNLVAGNVSEDVRILTRKSINEPGEPDGIVLSAATSVWLPVSRQRLFDFLRDEQSRSHWDILSNGGMLQEII QIPKGQGQCNRVSLLRSTAVDADAGENNMLILQETRNDVSGSQVVYAPVDIQSMSVVTSGGDSTYVALLPSGFVILPDNSFSNGEPSNSDGNPVKRDSDS NNGGGSFFTVGFQILASNLPSAKLTVESVETIHNLISCTMQRIRTAFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.012G139300 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.007G007800 [exp]	17.94	0.5317	Pt-ACS1.1,ACS3
AT4G16270			Peroxidase superfamily protein...		Potri.008G103200 [exp]	38.98	0.4959
					Potri.005G181150 [exp]	139.37	0.4390
AT1G08790			Protein of unknown function (D...		Potri.005G055100 [exp]	152.56	0.4193
AT5G25930			Protein kinase family protein ...		Potri.018G088086 [exp]	160.55	0.4096

Compare expression of checked genes

Potri.012G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.