Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07250 324 / 7e-110 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G63120 301 / 2e-101 ATRBL2 RHOMBOID-like 2 (.1) AT2G29050 295 / 6e-98 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G12750 266 / 8e-88 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT3G53780 261 / 1e-84 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 233 / 1e-74 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G52580 178 / 2e-53 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G77860 171 / 2e-50 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142000 [exp] 437 / 2e-154 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.003G122900 [exp] 353 / 1e-121 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 338 / 8e-116 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 293 / 3e-97 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 291 / 2e-96 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 269 / 1e-87 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 169 / 1e-48 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024497 [exp] 357 / 7e-123 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 350 / 3e-120 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 342 / 2e-116 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10023789 [exp] 285 / 8e-94 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 288 / 3e-91 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10005464 [exp] 262 / 4e-85 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 261 / 8e-85 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10003743 [exp] 159 / 3e-45 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10028036 [exp] 158 / 1e-44 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.012G139600.1 pacid=42783131 polypeptide=Potri.012G139600.1.p locus=Potri.012G139600 ID=Potri.012G139600.1.v4.1 annot-version=v4.1 ATGCAAGAACATCATCAAGAAACGTCAAACATGTCAAGAGAAGACATAGAAAGAGGAGGAGGAGTTAAGAGCAGAGGCAACAGCAACAACAACAACAACG GTTACTTATCAACTCCAACATATCTGATAGAAGATGCAGAAGCTCATTACTGGACATCATGGCTTGTACCTATGTTTGTGGTGGCACATGTTGTTGTCTT CATTGTTGTGATGTACATCAATAATTGTCCTAAACATTTACATACAAGATTTGAAGGGAAGTGTGCTGCAAGGTTTCTTGGGAGGTTTTCTTTTGAGCCT TTGAAAGATAATCCTCTCTTTGGTCCTTCTTCTGCTACGTTAGAGAGATTCGGAGCTCTTGAGTGGACCAAGGTTGTACACAAGCACCAAGGATGGAGGC TTATCAGTTGTATCTGGTTGCATGCTGGTATTATTCATCTTCTTGCAAACATGCTGAGCCTGGTCTTCATTGGCATTCGTCTCGAGCAGCAATTTGGGTT CGTTCGCATCGGAATTGTTTATCTTCTGTCAGGATTTGGAGGTAGTGTGCTTTCCTCTCTATTTATTAGAAACAGCATCTCTGTTGGTGCCTCGGGTGCC CTTTTCGGGCTTCTTGGAGCAATGCTTTCAGAACTAATTACAAACTGGAGCATCTACACCAACAAGACTGCAGCTCTGTTTACACTTCTGGTCATCACAG CCATTAACCTTGCAATAGGAATTTTGCCACGTGTTGATAATTTTGCCCATATCGGTGGGTTTCTGTCAGGGTTCCTCCTAGGCTTTGTTCTGCTGCCCCG TTCACAATATGGTTGGCAAGGACGTCGGAATCTTCCCTCCGGTGTTGGTTTCAAATCTAAGCTCAAGGCTTACCAATATGCTCTATGGTTGGTTTCTGTG GCGCTGCTGATTGTAGGATTCACAGTTGCATTGGTGATGTTGTTCAAGGGAAAAAATGGAAATGATCATTGCCATTGGTGTCACTACCTCAGCTGCGTAC CTACTTCCAGATGGAAATGCGATGAAAACAACCTGTAG
AA sequence Show only first row Show all	>Potri.012G139600.1 pacid=42783131 polypeptide=Potri.012G139600.1.p locus=Potri.012G139600 ID=Potri.012G139600.1.v4.1 annot-version=v4.1 MQEHHQETSNMSREDIERGGGVKSRGNSNNNNNGYLSTPTYLIEDAEAHYWTSWLVPMFVVAHVVVFIVVMYINNCPKHLHTRFEGKCAARFLGRFSFEP LKDNPLFGPSSATLERFGALEWTKVVHKHQGWRLISCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGIVYLLSGFGGSVLSSLFIRNSISVGASGA LFGLLGAMLSELITNWSIYTNKTAALFTLLVITAINLAIGILPRVDNFAHIGGFLSGFLLGFVLLPRSQYGWQGRRNLPSGVGFKSKLKAYQYALWLVSV ALLIVGFTVALVMLFKGKNGNDHCHWCHYLSCVPTSRWKCDENNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	0	1
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	3.60	0.7277
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	6.32	0.6222
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	7.21	0.7087	RHG4.2
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	11.22	0.6624
AT5G59350			unknown protein		Potri.001G238300 [exp]	11.61	0.6776
AT1G12380			unknown protein		Potri.012G129100 [exp]	16.61	0.6650
AT5G11000			Plant protein of unknown funct...		Potri.006G261300 [exp]	21.21	0.5922
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	21.90	0.6049
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	23.45	0.6652
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.002G148600 [exp]	24.81	0.6111

Compare expression of checked genes

Potri.012G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.