Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07240 138 / 3e-36 IQD24 IQ-domain 24 (.1) AT5G62070 129 / 3e-33 IQD23 IQ-domain 23 (.1) AT4G23060 115 / 7e-28 IQD22 IQ-domain 22 (.1) AT3G16490 67 / 5e-12 IQD26 IQ-domain 26 (.1) AT1G01110 56 / 4e-08 IQD18 IQ-domain 18 (.1.2) AT4G14750 51 / 1e-06 IQD19 IQ-domain 19 (.1) AT3G52290 50 / 2e-06 IQD3 IQ-domain 3 (.1) AT5G03040 48 / 1e-05 IQD2 IQ-domain 2 (.1.2.3) AT2G26410 47 / 2e-05 IQD4 IQ-domain 4 (.1) AT4G00820 46 / 3e-05 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142200 [exp] 630 / 0 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G108800 [exp] 201 / 4e-59 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.003G122800 [exp] 166 / 4e-46 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.008G156700 [exp] 87 / 2e-18 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.001G190500 [exp] 82 / 1e-16 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.010G082600 [exp] 81 / 3e-16 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.003G047800 [exp] 71 / 6e-13 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G448100 [exp] 64 / 1e-10 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.002G178500 [exp] 62 / 3e-10 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005760 [exp] 296 / 4e-96 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10027435 [exp] 269 / 2e-85 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10017841 [exp] 135 / 1e-34 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 126 / 2e-32 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10011131 [exp] 55 / 6e-08 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10021904 [exp] 54 / 1e-07 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10043033 [exp] 53 / 4e-07 AT3G16490 197 / 3e-59 IQ-domain 26 (.1) Lus10006613 [exp] 52 / 6e-07 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10008269 [exp] 51 / 1e-06 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10014870 [exp] 50 / 3e-06 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.012G139800.1 pacid=42783970 polypeptide=Potri.012G139800.1.p locus=Potri.012G139800 ID=Potri.012G139800.1.v4.1 annot-version=v4.1 ATGGGGTTTTTCCGGAGACTTTTTGGCCCCAGGAAGAAGTCTAGATCTTCAAAAACAACACCCTCTTTGTCACAGTCCAACAAGGTTGATCAAGATTCGG TGTCAACTACTCATTTTGATGCTAGCAATTTGGATGCTAATAAACATGCAATAGCTGTGGCAGCTGCTACTGCTGCTGTTGCTGAAGCTGCACTTGCTGC TGCTCAAGCGGCTGCTGAGGTTGTTAGATTGACCAGTGGTGGTCCTGGTGGGAGAGGTGGTGGTAATGTTGGTGGCAGTCACCGGCGGTTTGTGGAGGAA GTGTCGGCTGTTAAAATTCAATCTGCCTTTCGTGGTTATTTGGCAAGGAGAGCACTAAGGGCACTAAAAGCTTTGGTGAAGCTTCAAGCCTTAGTGAGAG GCCACATTGTGAGAAAGCAAACAGCAGACATGCTTAGGCGTATGCAGACATTAGTGAGACTGCAGGCTCGAGCCCGTGCTAGTCGCAGTTATGTGTCGGA CTCATCGCACACTACTGGCAAGTCCTCTCATTCTCGTTATGCTGTCCCTGCAAGTCCTTCAAAGGATCACCTGTTTCGTGTTTCTAGTACCAAATTTGAT GGGCCCTCGATTCTCAAGAGATGTGGTTCAAATGCAAACTTTAGGGAGAGCATTGACTTTGACAAAGTAAAATGGGGTTCGAACTGGCTAGACCGTTGGA TGGAAGAAAGTTTTTTGAATGACCATGGCAGCAATCCACCGAGAAGTCGAAATGCTGATGATGAGAAGAGTGACAAGATTCTTGAAGTGGACACTTGGAA GCCCCATGTGAAATCCCAACAAAGTAATAGAACATTTCAGACTTCACAGCATGCTTTGGCTTCAGATCATAACAATCAGAGCTTTATGACTTTTGACTCT ATGTCAAAACTATCAAAAAAAGAACCGAATCCAATGCCGAGCATCTCTTCAGGAGAAATTTTGCAGTCTCTTAAATTACCTCTAGGAAATGATGAAGCAG TTTATAGGACCGCTGAGAATAGCCCTCGAATGTTCTCTGCAACATCTAGACCTGGAAGTAGTGGTCGGAGAGGAGGCCCTTTTACACCAACAAGGAGTGA GTGCTCGTGGGGCTTCTTTAATGGATACTCGGGTTACCCCAACTACATGGCTAACACTGAATCATCTCGAGCCAAGGTCAGGTCACAAAGTGCCCCAAGG CAGAGGCTAGAGTTTGAGAAATATGGTTCAAGCAGAAGATCTGTTCAGGGGTATTCTGATTCAGAAACTCGTTCAGAAAGGGGTTTTGCTCAAAATACTG AACTTCAAAACAAAGCTTACGTAGCATCTGGCTACTTGAATAGACTAGGGACTTCCGACTTGAGGTGA
AA sequence Show only first row Show all	>Potri.012G139800.1 pacid=42783970 polypeptide=Potri.012G139800.1.p locus=Potri.012G139800 ID=Potri.012G139800.1.v4.1 annot-version=v4.1 MGFFRRLFGPRKKSRSSKTTPSLSQSNKVDQDSVSTTHFDASNLDANKHAIAVAAATAAVAEAALAAAQAAAEVVRLTSGGPGGRGGGNVGGSHRRFVEE VSAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQARARASRSYVSDSSHTTGKSSHSRYAVPASPSKDHLFRVSSTKFD GPSILKRCGSNANFRESIDFDKVKWGSNWLDRWMEESFLNDHGSNPPRSRNADDEKSDKILEVDTWKPHVKSQQSNRTFQTSQHALASDHNNQSFMTFDS MSKLSKKEPNPMPSISSGEILQSLKLPLGNDEAVYRTAENSPRMFSATSRPGSSGRRGGPFTPTRSECSWGFFNGYSGYPNYMANTESSRAKVRSQSAPR QRLEFEKYGSSRRSVQGYSDSETRSERGFAQNTELQNKAYVASGYLNRLGTSDLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.012G139800 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.012G065750 [exp]	1.41	0.9105
AT5G41050			Pollen Ole e 1 allergen and ex...		Potri.001G326200 [exp]	4.69	0.8641
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	6.00	0.8929
					Potri.016G052301 [exp]	7.21	0.8796
AT3G51080	GATA	GATA6	GATA transcription factor 6 (....		Potri.007G016600 [exp]	9.00	0.7944
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	9.48	0.8798	Pt-TIP2.7
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.013G025900 [exp]	10.24	0.8713
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	10.81	0.8687	Pt-CDC2.1,1
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	12.32	0.8709
AT3G04860			Plant protein of unknown funct...		Potri.013G036400 [exp]	13.07	0.8119

Compare expression of checked genes

Potri.012G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.