Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22950 349 / 5e-125 ATARFC1 ADP-ribosylation factor C1 (.1.2) AT1G70490 209 / 2e-69 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 209 / 2e-69 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 207 / 1e-68 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 206 / 3e-68 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 206 / 3e-68 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G14670 204 / 2e-67 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G24765 191 / 2e-62 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 188 / 4e-61 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 186 / 2e-60 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G142600 [exp] 368 / 3e-132 AT3G22950 351 / 1e-125 ADP-ribosylation factor C1 (.1.2) Potri.005G142100 [exp] 208 / 3e-69 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 207 / 1e-68 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 207 / 1e-68 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 207 / 1e-68 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 207 / 1e-68 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 207 / 1e-68 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 206 / 2e-68 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 206 / 2e-68 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006632 [exp] 362 / 1e-129 AT3G22950 358 / 2e-128 ADP-ribosylation factor C1 (.1.2) Lus10039392 [exp] 358 / 1e-128 AT3G22950 355 / 2e-127 ADP-ribosylation factor C1 (.1.2) Lus10030884 [exp] 205 / 1e-67 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 205 / 2e-67 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 207 / 4e-67 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 203 / 5e-67 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 205 / 2e-64 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10009571 [exp] 189 / 1e-61 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10030605 [exp] 205 / 3e-61 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10020392 [exp] 187 / 7e-61 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.012G139900.2 pacid=42783243 polypeptide=Potri.012G139900.2.p locus=Potri.012G139900 ID=Potri.012G139900.2.v4.1 annot-version=v4.1 ATGGGGGCGTTCGTATCAAGGTTTTGGTTCATGCTGTTTCCGGCAAATGAGTACAAGATTGTGGTAGTTGGGTTAGATAATGCTGGTAAGACAACTACGC TTTACAAATTGCATTTAGGTGAGGTTGTGACGACACACCCTACAGTTGGTAGTAATGTTGAAGAGCTTGTTTACAAGAACATTCGATTTGAGGTCTGGGA TCTTGGTGGGCAAGATAGACTCAGGACTTCATGGGCAACATATTATCGTGGAACTCATGCTGTCATCGTGGTGATAGACAGCACTGATAGAGACAGAATC TCCATTATGAAAGATGAACTCTTCATGCTGCTGGGACATGATGATTTACAACATTCTGTTGTACTTGTATTTGCAAATAAACAAGACCTCAAGGATGCCA TGACACCAGCTGAGATTGCTGATGCTCTTTCTCTTCACAGCATCAAGAATCATGATTGGCATATCCAAGCCTGTTGTGCCCTTACAGGGGACGGTTTATA CGATGGTCTAGGGTGGATCGCACAAAGAGTTACTGGCAAAGCACCAAGTTGA
AA sequence Show only first row Show all	>Potri.012G139900.2 pacid=42783243 polypeptide=Potri.012G139900.2.p locus=Potri.012G139900 ID=Potri.012G139900.2.v4.1 annot-version=v4.1 MGAFVSRFWFMLFPANEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRTSWATYYRGTHAVIVVIDSTDRDRI SIMKDELFMLLGHDDLQHSVVLVFANKQDLKDAMTPAEIADALSLHSIKNHDWHIQACCALTGDGLYDGLGWIAQRVTGKAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	0	1
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.013G066000 [exp]	1.41	0.7730
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.002G018700 [exp]	1.73	0.8245	Pt-SKP1.2
AT4G38370			Phosphoglycerate mutase family...		Potri.009G165400 [exp]	7.74	0.7197
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.002G205700 [exp]	9.89	0.7331	Pt-GRP2.1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	10.81	0.7088
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.008G051700 [exp]	13.07	0.7472	Pt-RAB1.11
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G160900 [exp]	13.96	0.7386
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.002G244700 [exp]	15.19	0.7158
AT4G22310			Uncharacterised protein family...		Potri.011G023100 [exp]	15.49	0.7420
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Potri.003G060600 [exp]	15.87	0.7156

Compare expression of checked genes

Potri.012G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.