Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73040 216 / 3e-72 Mannose-binding lectin superfamily protein (.1) AT1G19715 110 / 3e-28 Mannose-binding lectin superfamily protein (.1.2.3) AT3G16460 86 / 2e-19 JAL34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) AT1G52060 81 / 2e-18 Mannose-binding lectin superfamily protein (.1) AT3G16420 79 / 1e-17 JAL30, PBP1 JACALIN-RELATED LECTIN 30, PYK10-binding protein 1 (.1.2.3) AT2G25980 79 / 2e-17 Mannose-binding lectin superfamily protein (.1) AT1G52070 79 / 2e-17 Mannose-binding lectin superfamily protein (.1) AT3G16430 78 / 3e-17 JAL31 jacalin-related lectin 31 (.1.2) AT3G16440 77 / 6e-17 ATMLP-300B, MEE36 maternal effect embryo arrest 36, myrosinase-binding protein-like protein-300B (.1) AT3G16470 77 / 6e-17 JAL35, JR1 JASMONATE RESPONSIVE 1, jacalin-related lectin 35, Mannose-binding lectin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G232400 [exp] 135 / 5e-37 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.005G232500 [exp] 131 / 8e-36 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 129 / 1e-34 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.017G010900 [exp] 73 / 4e-15 AT3G16460 135 / 5e-34 jacalin-related lectin 34, Mannose-binding lectin superfamily protein (.1.2) Potri.010G144900 [exp] 47 / 7e-07 AT1G05760 92 / 5e-24 restricted tev movement 1, Mannose-binding lectin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037605 [exp] 195 / 1e-61 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1) Lus10006866 [exp] 195 / 2e-58 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10024290 [exp] 134 / 1e-36 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10024291 [exp] 130 / 4e-35 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [poplar] [flax] Man_lectin PF01419 [poplar] [flax] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Potri.012G140001.1 pacid=42782980 polypeptide=Potri.012G140001.1.p locus=Potri.012G140001 ID=Potri.012G140001.1.v4.1 annot-version=v4.1 ATGGAAAATGGGAAGGAACAATCAGCTGCGAGAAAGAAGAGCACCATATTAGTTGGACCATGGGGAGGGAATGGAGGGGATAGCTGGGATGATGGGATCT ACCATGGAGTAAGAGAAATCACAATTGTTTATGATCAATGCATCGACTCGATCCAGGTTGTGTATGACAAGAATGGCAAGCCTATCACAGCAGAAAACCA TGGAGGTGTTGGAGGCAGTAGAACAGCTGAGATTAAGTTGCAATATCCGGAGGAGTACTTAACCAGTGTGAGTGGCCATTACTGCCCGGTAGTCTATGGT GGCAGTCCTGTGATTCGATCGTTAGCATTCAGCAGCAACAAAAGAACATTTGGACCATTTGGAGTTGAAGAAGGAACGCCATTTACACTTTCAATGGACG GAGCATCGATTGTAGGCTTTAAGGGTAGAGGTGGATGGTATCTTGATGCCATTGGGTTTCGTTTATCTCGTATTCAATCCACCAAAGTTCTCAAAAAATT TCAACAAAAGCTTCAAAGGCTCACCAGTACGGTTTCAAAGTCCTCTGCCTCCAAGGATGCTGAAAAAACCTATTGA
AA sequence Show only first row Show all	>Potri.012G140001.1 pacid=42782980 polypeptide=Potri.012G140001.1.p locus=Potri.012G140001 ID=Potri.012G140001.1.v4.1 annot-version=v4.1 MENGKEQSAARKKSTILVGPWGGNGGDSWDDGIYHGVREITIVYDQCIDSIQVVYDKNGKPITAENHGGVGGSRTAEIKLQYPEEYLTSVSGHYCPVVYG GSPVIRSLAFSSNKRTFGPFGVEEGTPFTLSMDGASIVGFKGRGGWYLDAIGFRLSRIQSTKVLKKFQQKLQRLTSTVSKSSASKDAEKTY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	0	1
AT1G24620			EF hand calcium-binding protei...		Potri.002G088500 [exp]	2.00	0.9069
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.009G110500 [exp]	2.44	0.8754
AT5G59970			Histone superfamily protein (....		Potri.018G093000 [exp]	5.29	0.8413	HFO907,Pt-HIS4.1
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	7.21	0.8692
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120340 [exp]	7.48	0.8614
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120200 [exp]	8.36	0.8637
AT5G56350			Pyruvate kinase family protein...		Potri.013G060400 [exp]	8.48	0.8698
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	10.95	0.8642
					Potri.012G085800 [exp]	11.61	0.8671
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G029700 [exp]	12.00	0.8296	APP1.2

Compare expression of checked genes

Potri.012G140001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.