Plant FIBer expression Database

Potri.012G140067 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.012G140067.1 pacid=42783230 polypeptide=Potri.012G140067.1.p locus=Potri.012G140067 ID=Potri.012G140067.1.v4.1 annot-version=v4.1
ATGCTGTCAGATATCATCAACAAAAAACTTAAAGGGTATCTTGGCCAGCTTTCGAGTACCAGACTGTCCCTCGGCCAGAAACAAGCTTTTACACAGCTCT
TACCCTTGTCGCCCCAAGAGATTTGTTGGTACAGGGATTCGAACTTGAAACTTGGAGGGAGCAGACCCCCAAGCCCCGAGCTAAATGCCGCTAGACCAAC
CCTTTGGGTTCCAAATCCTTTACTTGTTCGGTCGCTGTTTAGCTGTCTCAGCCACCTCTATCTTTTCAGCAACCACCTTGCCATACAAACCTCCATCAAG
AGTCCTTAA
AA sequence
>Potri.012G140067.1 pacid=42783230 polypeptide=Potri.012G140067.1.p locus=Potri.012G140067 ID=Potri.012G140067.1.v4.1 annot-version=v4.1
MLSDIINKKLKGYLGQLSSTRLSLGQKQAFTQLLPLSPQEICWYRDSNLKLGGSRPPSPELNAARPTLWVPNPLLVRSLFSCLSHLYLFSNHLAIQTSIK
SP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.012G140067
[exp]
0 1
AT4G00150 GRAS ATHAM3, SCL6, L... LOST MERISTEMS 3, ARABIDOPSIS ... Potri.002G144200
[exp]
3.87 0.8489
AT2G37390 NAKR2 SODIUM POTASSIUM ROOT DEFECTIV... Potri.006G213900
[exp]
12.60 0.8258
AT5G53300 UBC10 ubiquitin-conjugating enzyme 1... Potri.004G175000
[exp]
15.09 0.8197 UBC.11
AT5G06800 GARP myb-like HTH transcriptional r... Potri.006G191000
[exp]
26.32 0.7933
AT2G45510 CYP704A2 "cytochrome P450, family 704, ... Potri.014G072300
[exp]
32.71 0.7823
AT5G42630 GARP KAN4, KANADI4, ... KANADI 4, ABERRANT TESTA SHAPE... Potri.014G037200
[exp]
43.68 0.7476
Potri.011G072616
[exp]
48.98 0.7885
AT2G37210 LOG3 LONELY GUY 3, lysine decarboxy... Potri.002G024000
[exp]
50.41 0.7501
AT1G10690 unknown protein Potri.010G045200
[exp]
53.27 0.7818
AT4G25960 ABCB2, PGP2 ATP-binding cassette B2, P-gly... Potri.001G139600
[exp]
54.77 0.7585

Potri.012G140067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.