Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01930 68 / 8e-14 BPC1 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G13760 68 / 1e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G59940 67 / 2e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G01910 66 / 8e-13 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 64 / 1e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT3G27500 64 / 3e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G02180 64 / 4e-12 DC1 domain-containing protein (.1) AT5G59930 63 / 4e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT4G01920 63 / 4e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G22355 63 / 5e-12 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G172400 [exp] 102 / 8e-26 AT2G21840 95 / 6e-20 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044200 [exp] 94 / 9e-23 AT5G22355 203 / 3e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.019G020100 [exp] 94 / 1e-22 AT2G21840 239 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047000 [exp] 91 / 9e-22 AT5G22355 237 / 1e-68 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044600 [exp] 90 / 2e-21 AT5G22355 260 / 7e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044800 [exp] 89 / 7e-21 AT5G22355 260 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047200 [exp] 88 / 9e-21 AT5G22355 242 / 3e-70 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G047300 [exp] 87 / 2e-20 AT5G22355 234 / 1e-67 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G044732 [exp] 84 / 4e-19 AT5G22355 261 / 3e-77 Cysteine/Histidine-rich C1 domain family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003919 [exp] 55 / 1e-09 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 56 / 2e-09 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 42 / 0.0001 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 40 / 0.0006 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G140133.1 pacid=42784011 polypeptide=Potri.012G140133.1.p locus=Potri.012G140133 ID=Potri.012G140133.1.v4.1 annot-version=v4.1 ATGCGGAAAATTACTAACCCAGCTCGGACTTATGGTTGCGTCACCTGTCAAATTCTTCTCCACCAATCTTGTTTTGATTTGCCATTGCAAATCCGACACT TCTTTCACCCATGCCCTCTTACCCTTTGCATTCAACCAAATTGTTTTAATTGTGGAGCTTGTGACAGAGCTATCCTGCAGAGCTTCTACTTTTACTGTAA ATGGTGTAATTTCGCCATGGATATAGAATGTGCTCTGCTACCAACCGTAAAAGCTCAAAGTGGAGAGCAGTTTTGCCATTTTACCAATGGGCATCCATTA ACACTCACTGAGATAAAAGACGAGGATGAAATTTCTTGCTCAGCCTGCGGGAGATGCTGTTCAGGTCCAGCATATGATTGCAGCAAATGTAGTTTTATTC TTGACAAATCATGCTTTGAGCTTCCACGGGAAATTCAACACAACTTTCACCCAAACCATCCTCTAACCTTACTAACCCAGCTATGTGAACTCGAGTGA
AA sequence Show only first row Show all	>Potri.012G140133.1 pacid=42784011 polypeptide=Potri.012G140133.1.p locus=Potri.012G140133 ID=Potri.012G140133.1.v4.1 annot-version=v4.1 MRKITNPARTYGCVTCQILLHQSCFDLPLQIRHFFHPCPLTLCIQPNCFNCGACDRAILQSFYFYCKWCNFAMDIECALLPTVKAQSGEQFCHFTNGHPL TLTEIKDEDEISCSACGRCCSGPAYDCSKCSFILDKSCFELPREIQHNFHPNHPLTLLTQLCELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01930		BPC1	Cysteine/Histidine-rich C1 dom...		Potri.012G140133 [exp]	0	1
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	12.48	0.8686
AT3G20600		NDR1	non race-specific disease resi...		Potri.004G023400 [exp]	15.03	0.8636
					Potri.005G030901 [exp]	16.09	0.7052
					Potri.001G444350 [exp]	16.97	0.8608
					Potri.010G242050 [exp]	24.08	0.8222
AT3G50120			Plant protein of unknown funct...		Potri.001G071400 [exp]	26.60	0.8573
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	30.00	0.8535
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	31.22	0.8538	NAC020
AT1G71140			MATE efflux family protein (.1...		Potri.004G093400 [exp]	31.74	0.8376
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.010G104900 [exp]	32.15	0.8419	RDR903

Compare expression of checked genes

Potri.012G140133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.