Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23730 426 / 3e-149 EFO2, RUP2 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52250 383 / 1e-131 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 197 / 6e-57 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G53090 184 / 2e-51 SPA4 SPA1-related 4 (.1.2) AT3G15354 179 / 9e-50 SPA3 SPA1-related 3 (.1) AT2G46340 168 / 1e-45 SPA1 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) AT4G11110 167 / 2e-45 SPA2 SPA1-related 2 (.1) AT3G49660 67 / 5e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 57 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 53 / 1e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143200 [exp] 543 / 0 AT5G23730 395 / 2e-137 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 206 / 4e-60 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 202 / 6e-59 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 196 / 4e-58 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G095300 [exp] 182 / 2e-50 AT2G46340 846 / 0.0 SUPPRESSOR OF PHYA-105 1, SPA (suppressor of phyA-105) protein family (.1) Potri.011G119500 [exp] 182 / 2e-50 AT3G15354 982 / 0.0 SPA1-related 3 (.1) Potri.001G399600 [exp] 177 / 7e-49 AT3G15354 1003 / 0.0 SPA1-related 3 (.1) Potri.003G137100 [exp] 172 / 3e-47 AT4G11110 1016 / 0.0 SPA1-related 2 (.1) Potri.001G094500 [exp] 171 / 2e-46 AT4G11110 1016 / 0.0 SPA1-related 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027454 [exp] 258 / 1e-84 AT5G23730 248 / 2e-81 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005742 [exp] 228 / 3e-72 AT5G52250 226 / 3e-72 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 202 / 8e-59 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 202 / 9e-59 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10043323 [exp] 176 / 1e-48 AT3G15354 906 / 0.0 SPA1-related 3 (.1) Lus10019475 [exp] 175 / 4e-48 AT3G15354 992 / 0.0 SPA1-related 3 (.1) Lus10033942 [exp] 109 / 1e-25 AT4G11110 766 / 0.0 SPA1-related 2 (.1) Lus10032358 [exp] 89 / 7e-19 AT4G11110 784 / 0.0 SPA1-related 2 (.1) Lus10003487 [exp] 59 / 2e-09 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 57 / 2e-08 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G140200.1 pacid=42783681 polypeptide=Potri.012G140200.1.p locus=Potri.012G140200 ID=Potri.012G140200.1.v4.1 annot-version=v4.1 ATGAAAAACCTCTCCACTAAATTCCATCGGCATAGTCACCACCACACACAAGAATCTGAAAACCACGAAAAAGAAGCCATAGAGGAAGAACAAGAACAAC AAGAAGAAAAAGCTAGGTGTGAATGGGATTTCAGTCTCACAACAATTGTTTCATCAGGAAACAACAATATCAGTAGTACTCCAGCCATATCGGATGCTCT AGGGGTGATTGAATTCGACCAGACGAACAGCATCATTGCCACAGGTGGAATAGCAAGAAAGATAAGAATTTACAACTTCAAGTCTTTGTTTGCACATGAA AATACTAGCCAAAATGCGCACGAAATTACTTGCTTAGACCATGCTAGGGCTTGTGACTATTATATTTGTACCCCAGCTAAGCTTAGTAGCATCCGATGGA AACCCAGTTCGGACGGGCGGGTTCTAGGGTCCGGAGACTACGACGGGGTGGTGATGGAATATTGTCTTGAGAGGAGAATACCAATCTTCGAACGAGATGA ACATGGCGGGCGACGGGTTTGGAGTGTGGACTACTCACATTGGGATCCGGTTTTGGGTGCATCCGGGTCGGATGATGGAACCATGCAAATGTGGGACACA CGTTGCGAGAGTGGGGAGGGCGTGGCTACTGTTCAGCCTGGTGTGGGTCGCAGTGCCGTGTGTTGCGTGGAGTTCAATCCATTTGGTGGACCAATAGTAG CCGTCGGATGCGCTGACAGAAGGGTATACGGGTACGACATTCGAATGACGGGTGACCCGGTATTTGTTCTTGATGGGCATAGGAAGACCGTGACGTACAT TAAATTTCTCGATAATGTTACATTGGTGTCTGCTAGCATTGATGGATGCTTGAAGCTATGGGATTCGGATAATTCAAACGTAATCCGGTCATACAAGGGG CACGTCAACAGCCGGAGCTTCATCGGATTGTCAGTGTGGAGGAATGGAGGCTTATTAGGGTGTGGGTCAGAAAACAATAAGGTTTTTGTGTATGACAGAA GATGGGGCGAGCCAATATGGGTTCACGAGTCTAACCCAGTGGGTAGGGATGGGTGTGGCGGCGGGTTCGTTAGCAGTGTGTGCTGGAGGCAAGTGGAGGA AGACCAGTGCACGCTCGTGGCAGGAGGATCAGATGGGGACTTGCAAGTTTTTCAAGGCAGAAGGAAGTCATAG
AA sequence Show only first row Show all	>Potri.012G140200.1 pacid=42783681 polypeptide=Potri.012G140200.1.p locus=Potri.012G140200 ID=Potri.012G140200.1.v4.1 annot-version=v4.1 MKNLSTKFHRHSHHHTQESENHEKEAIEEEQEQQEEKARCEWDFSLTTIVSSGNNNISSTPAISDALGVIEFDQTNSIIATGGIARKIRIYNFKSLFAHE NTSQNAHEITCLDHARACDYYICTPAKLSSIRWKPSSDGRVLGSGDYDGVVMEYCLERRIPIFERDEHGGRRVWSVDYSHWDPVLGASGSDDGTMQMWDT RCESGEGVATVQPGVGRSAVCCVEFNPFGGPIVAVGCADRRVYGYDIRMTGDPVFVLDGHRKTVTYIKFLDNVTLVSASIDGCLKLWDSDNSNVIRSYKG HVNSRSFIGLSVWRNGGLLGCGSENNKVFVYDRRWGEPIWVHESNPVGRDGCGGGFVSSVCWRQVEEDQCTLVAGGSDGDLQVFQGRRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Potri.012G140200 [exp]	0	1
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.004G106600 [exp]	4.47	0.9312
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073166 [exp]	5.74	0.9271
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072991 [exp]	8.12	0.9376
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073366 [exp]	8.94	0.9258
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G072591 [exp]	16.85	0.9258
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.005G073800 [exp]	18.81	0.7947
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073391 [exp]	22.04	0.9217
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	26.70	0.8787
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034100 [exp]	34.78	0.8958
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	36.33	0.8720

Compare expression of checked genes

Potri.012G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.