Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) AT4G29820 121 / 2e-35 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143300 [exp] 229 / 2e-78 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.006G146400 [exp] 121 / 1e-35 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014987 [exp] 223 / 1e-75 AT4G25550 383 / 8e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10038867 [exp] 206 / 9e-69 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10027624 [exp] 103 / 1e-28 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10011944 [exp] 81 / 1e-19 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF13869 [poplar] [flax] NUDIX_2 Nucleotide hydrolase
Representative CDS sequence Show only first row Show all	>Potri.012G140301.2 pacid=42784051 polypeptide=Potri.012G140301.2.p locus=Potri.012G140301 ID=Potri.012G140301.2.v4.1 annot-version=v4.1 ATGGTATGGGCAGGGTCAGCTGTGGTGAATACATACCCTTTATCAAGCTACACATTTGGTACTAAAGAGCCCAAGATGGAGAAAGACACTTCTGTTGCTG ATCGACTTGCTCGCATGAAAGTAAATTATATGAAAGAGGGGATGAGGACAAGTGTGGAAGCTATTTTGCTGGTACAGGAACACAATCATCCTCACATACT TCTTCTGCAAATTGGAAACACTTTCTGCAAACTTCCTGGTGGGCGTTTGAAGCCTGGAGAGAATGAAAATGAGGGTTTGAAAAGAAAGCTGACAAGCAAA CTTGGGGCTAACTCACCTGCTCTTGTGCCAGACTGGCAGGTAACCTCTTTTTTGGCTATCTTCACGTAG
AA sequence Show only first row Show all	>Potri.012G140301.2 pacid=42784051 polypeptide=Potri.012G140301.2.p locus=Potri.012G140301 ID=Potri.012G140301.2.v4.1 annot-version=v4.1 MVWAGSAVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENENEGLKRKLTSK LGANSPALVPDWQVTSFLAIFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	2.23	0.9392
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	8.48	0.8930
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014501 [exp]	9.00	0.8825
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	10.00	0.9150
AT1G25550	GARP		myb-like transcription factor ...		Potri.010G128900 [exp]	10.44	0.8509
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048500 [exp]	14.45	0.9051
AT3G22425		HISN5A, IGPD	imidazoleglycerol-phosphate de...		Potri.008G152701 [exp]	15.87	0.8813
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	16.52	0.9016
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	17.34	0.9122
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	17.72	0.8339

Compare expression of checked genes

Potri.012G140301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.