Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29230 399 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15300 352 / 5e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 355 / 2e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 343 / 2e-109 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 340 / 2e-108 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 340 / 2e-108 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G15930 337 / 8e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 338 / 1e-106 unknown protein AT5G37570 329 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G56690 332 / 1e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125500 [exp] 403 / 4e-134 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 395 / 4e-132 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 381 / 2e-126 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G207500 [exp] 375 / 8e-124 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G048800 [exp] 374 / 9e-121 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 364 / 1e-119 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.016G128900 [exp] 367 / 2e-119 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 369 / 4e-119 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 361 / 7e-117 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027455 [exp] 714 / 0 AT3G29230 324 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 391 / 3e-129 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 383 / 2e-126 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 359 / 5e-117 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 356 / 4e-116 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021069 [exp] 352 / 2e-115 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 352 / 2e-115 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 358 / 3e-115 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 351 / 4e-115 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 351 / 2e-114 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G140400.2 pacid=42782614 polypeptide=Potri.012G140400.2.p locus=Potri.012G140400 ID=Potri.012G140400.2.v4.1 annot-version=v4.1 ATGCCTTGTAACTTAGAACTAAAAATCTCAAAAACATTGCCAAAATGCACATTCCAGCATCTGAAACAAATCCATGCCTTGATAATCACTTGTTCTCTCT CCAAAAACATCAAAATATTCTCCAAATTTCTTCGTCGAACCACCGAGTTCGGCAGAATGGATTATTCCAATCTAATATTCTCTCAAATGGGTCATGATTC CAGTGCAGAAATCGTGATTTGGAATGCCATGATCAGAGGGTATGCGTTCAATGGCCCTTTTCAGGAATGTATACGGATGTTCGACGAAATGCCTCAGAGA GGACTAAAGCCGCACAACTTCACGTATCCTTATGTAATCAACTCTTGTTGTGAATTGGAGTGGTATGGAAGGGGAAAGAGGGTGCATTGCGAGATTGTAA AGTCTGGATTTGAGTCGAGCTACGCGGTTGCCAATTCTCTATTTAACATGTATTTGAAAATGCCGGCGTCTTTTGACGTGGGTTTGGCTAGTAATTGCAA GTTAGATTATGCTCGTAAGATTTTTGATGATATGTGTGTAAGACCGGTAGAATTATGGAATCAAATGATAGGTAAGTACGTAAACATTGGTGATGTCAAG TCAGCAAGAGAGTTGTTTGATATTATGCCTGAAAGAGATATTGTTTCTTGGAATTCTATGATTTTAGGTTATGCCAAAGGTGGAAAAGTCGCAAATGCGA GAGGTTTGTTTGAGAAAATGCCAGAGAAGAATGTTATTTCATGGACTTCGATGATTGGAGCATATGCTGATACAGACGATCTTGAAACAGCTAGAAGCTT TTTTGAGACAATGCCACAGAGGAATGTGGTTTCGTGGAATTCAATGATTTCAAGTTATGCCAAACACGGGAAATTCGTAGAAAGTTTGAATCTTTTTGTC CAAATGCAATCAGAAGGAGTGACCCCAGATGGCTATACTTTTGTTTCTGTTCTGTCAGCGTGTTCTAATTTAGGTGATTTGGAGTTTGGGAAATATATAC ACTATCTAAGTGGAGATTTGTCTCAATCGGAAGTCATGGTAGGGACTGCTCTTACAGAAATGTATGCTCAATGTGGAGATGTAGATAAAGCTTTTGCAGT TTTTATCAAGATAGGAAAGAGGGATGTTTTTTGCTGGAATGTCATTATCAAGGCATTAGCTCTACATGGAAGATCAGAGGAGGCTATCAAAATCTTCTTA CTGATGCGAAAGACCGGATTGAAGCCAAACGATTTCACGTTTACTAGCGCTTTGTTTGCTTGTAGCCATGGAGGTTTGGTGGAAGAAGGCCACATAATCT TTAATAGCATGGAGAAGGATTACAAGATAATTCCAAAGATTACACATTACGGTTGCTTAATTGACATGCTTTGCCGGAATGGCCAGCTTGAGGAAGCAAT GCTTCTAGTGGAAGATATGCCCTTTCAACCTGACGTTGCTATATGGGGAGCCTTGCTTGGGGGTTGTAGAGTTACAGGTGACTTGAAGTTAGCAGAAAAG GTAGTAGAGAAAGCTACTGAGATGGAAACAAATGAATCGGGAGTCTATGTGCTGTTGTCAAATATCCATGCCTCCGCAGGTCAGTGGATAGAGGCTGCAG ATGCAAGAAAAAAGATGGATGAGAAGAAAATATCGAAGAAGACAGGTAGCAGTGTTGTTTAG
AA sequence Show only first row Show all	>Potri.012G140400.2 pacid=42782614 polypeptide=Potri.012G140400.2.p locus=Potri.012G140400 ID=Potri.012G140400.2.v4.1 annot-version=v4.1 MPCNLELKISKTLPKCTFQHLKQIHALIITCSLSKNIKIFSKFLRRTTEFGRMDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQR GLKPHNFTYPYVINSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVK SARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFV QMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFL LMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEK VVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISKKTGSSVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.012G140400 [exp]	0	1
ATCG00440		ATCG00440.1, ND...	NADH:ubiquinone/plastoquinone ...		Potri.013G163000 [exp]	4.69	0.8756
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Potri.014G112200 [exp]	7.74	0.7525
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.003G130301 [exp]	10.58	0.7993
AT3G45020			Ribosomal L18p/L5e family prot...		Potri.004G214400 [exp]	11.74	0.8504
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Potri.017G106200 [exp]	12.64	0.7139
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077300 [exp]	17.43	0.7751
AT5G37290			ARM repeat superfamily protein...		Potri.001G225300 [exp]	18.33	0.7993
AT3G61170			Tetratricopeptide repeat (TPR)...		Potri.002G155100 [exp]	18.86	0.7104
					Potri.012G019350 [exp]	20.68	0.8288
AT5G61040			unknown protein		Potri.015G057600 [exp]	22.22	0.7568

Compare expression of checked genes

Potri.012G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.