Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52290 506 / 2e-154 SHOC1 shortage in chiasmata 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014981 [exp] 1013 / 0 AT5G52290 431 / 1e-127 shortage in chiasmata 1 (.1) Lus10038861 [exp] 976 / 0 AT5G52290 439 / 3e-130 shortage in chiasmata 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G141100.1 pacid=42784162 polypeptide=Potri.012G141100.1.p locus=Potri.012G141100 ID=Potri.012G141100.1.v4.1 annot-version=v4.1 ATGCGAACTCGATTTCTAAACACAGACTACTTTTCTTCTTCTCCGGTCGATACCCTAAGCTTCCTAAATCTTCCAGTCACTCACTTAGCTCCTCCTACTC CTCCGGAGCAAGAACTGCATCGTCTCCTTCGCTTCTTCCATCCTCTTGAAACGCTCTCTCTCCCGATCGAAAGACCTCCTATCGATTCCGCTCTCTCCAA ATTCATCTCCTCAGTGCTTCCTCATTTCATCGACTTTGATTTTCGTGATTTCTTACCTGATCGATTTCATCAGAAGGAGGAGGAGATAGAGAGAGGTTTT GGAACTGATTCAGCTCAAGAGAAAGATAATGGGAATAATAAACATTCGGAGAGGCTTGAAGTTATACAATTGGAAGCACCAGAGATTGATACATTCATGG AGAATGTGTGCTTCTCTGACGAAGGGATGCAACTCCTCTCTGAAGTTTCTGAGATTGAGAATGATTTGGATCTGCTCAGGCCTGAGATTGAAATGCAATA TCCTGACAAAGTTCAAGAATCAGTTTATTCTGTTGAAGATGTCACATTAGAGTTTGACATGGATGAAAAAGCTTGTGCGCTGGAATATGATGGTTCTGTT CAGGAGCAAGCACACTTTCATCATAACACATTCCCTCTTTTAGAAGTTGAAGAGATGAGTCTTCGAACTTTCACAAACCCATCCATGGAAGATGAGTTTC TTTTATTTCTTGAGCATGTTGAGTCCAAATGGGGTCAAGAAAATATCCTGCATATTGACGGGAACGAGCTATTGGGTTCGATGCACTTTGATATCTTAGA ATTTCTTTCAAAGCATTGTCCAGAAAAGCAATGCCTTGAACCTGAGCTGGCTTCTCTAGATACATCCCTGGGAATGGACATTATAAGCATGGTGGAAATT CCACAGGGTCGTGAAGACTCTGCAGATTGTCTTTCACCAATGAACCCAGTTATTTTTCAGGAATTCAAATTCCTTGAGACGGATTCATCTCAATTTTACG AAGTCTTCTTTGAAATGCAATCAACAGATGAACCACAAACATGTGACTCGATGTTCAGAGAAGATATGAATTTTAAGAATTTTGATGAATTGATTGTTAG TTGTGAACTAACACTGGAAGATGACACATTCAAATCTCTGCCTATACCTATTTTTTCTGATCCTGACAAGATAAGTTCGATCTATGCCATTATGAAGGAA AAACTAGCTGAACTCAAGCCACAACCCCTATCTGCATCCCATGGGATTTATTTGGATTGGCATCTCTTGGAGGAGGATAATTACAACGGTAAAAATTCAT CCATATATCAAAAAATGTTGGAGGAGTTGGATTCACACAACATTGATTTTGATAGGGAATCCTTTGATGGTGGAAAGTTGGTGATTGACCTTGTTTTCTC TGATAATGGTTTGAGTGGGGCACATATGGAAGAACATAAGGAACTGTTGAATGTGATTTCTGAAACTCCCAACAGTGGACTTGTGGAAGGTGCTTCAAGT GAGTCTTTGGATAGACGTCAAGAAACAGGAAATAGAGAAACATTAATTGGAGAAAATGCCAGGAAGGCTTCATTGTTGTTCAATTCTACGTCGCAATTCA ATGATCTTGATTATTTCTTGAATCCTGGGAAAGCTACTGCTAGGGGAAAAAATGAATCTACAGTCAAGATTCCTGATACTAGGGCTTCATTTCCCAAGGG AAGCAAATCTCATTCAGTTCCTGGTATGAATGAGAATATCAACGACCAGAAATTGGAGGAACTGCTAAATCTTGCACCTATTGAGGACAAGTTTAATATG ACATCTTCAGAAGCTGCAGATAAAGCTGAAGCTTGCAGCATCCCTTTGCAACTTCCTTATGCACCCTATGCAACAAAAACTGAGAAGACTCAAGGGGACA TGATTTATTTCCCTGACATCGTCATTATTGTGAATACTCAAAATTTTGACAAGGAAATGATAGTATCCAGAAGAAGTACATACCAAAGAATTCTTGCGAT GGAGAAAGAAGGAGCACAAGTTGTGGAGCGTGACTTGAATCTGCCTGTTGACGTGATTATTAGTTCTTCCATTTGCCTAGTGTGGTATGATTGTGGAAAT ATTGGAAAGAAAGCAACTGCTGCAGATGAAGCTTCTTCATGCTTGCCTCTGTGCATTGAGAATATTGCTGCAAATGTTTTGACATTGCTGAGTTTCGCTT TCAGTGGCTGCATTCTGGTCTTTGAGGGAGAAACCAGATTCCTCTCTACTGTAATGGAATTCTCTGATGGACTCTACGCAGCTGCAGCAAGCCTGGGAAT TGACCTACAGCTCTTTTCTTCCTATTCAGCTGAATTGACCGATGAAATTATATTAAACAGTATTTTGTATGCCACTAAGTCTTCCAGGGGCAGATATCCT AAAATGCCTGAATCAGAAACTCTTGCAGAATCCTTCCTTACCAAATTTCCATCAATTAATCCACTGACAGCACATGCAATTCTGTCTTCTGGAGGCATGC TTATTGAGTTTCTTGAATGGTCACATGAACGCAGGATCCTTGCAGTCCAACAGTATCATGTTCCAGTTGAAAGTGTTGCTCTGTTTAGTGCTTTGTGCAA ATATGGTGAGCGGGAGGATTCTAGATCCATAATGACAGACTGTTCCTCCTCTGCATCTTCTTGTCCTGACTCAGATAAACTTCATCTTCATATTGATTCT GAAAGAAAACGAAGAAAATGCATAAATAGCCTTCAAAAAATTGACATTCAAGTGGATGACATGTGGAAATCTGAATCACTGAACCAATTCACTGATGGTA TGCTGGATCCTGGAGTGTTTAAGCAATATGATTGTTGGACTTCAACAGATCCCGAGATGCTTGGTGAGTTGAAGCAACCTAGTTCATCTTTGAAAGATTT GTTTGGTCAAAAGCAGGTACCGGATATTGCTCCGGTGATGGATTTTCCTACTTCCATAAAACCACTTTATTCTGGAAACTTCAAAGATCCTCTGATTCGG GATGACAGAAGACAGCCCAGGTTACCACTGAACGATATATTTCTGGGTCAAAATCGGGCATCCGAAATAAATATCAAGAAGGAGTTGAAGTTAGACAGTG GCAATCCCTGTAAATCTAACGCTAACAACCTGCATGAATACTTTAGAGGTGAAGTCATAGACCTCACTGATGATCCCGTCTCGTTGGAGAAAGACGTTGC TTCTATTGCTAACTCTACATATTTCTCACCTTGGATGCCTGATACTGATATCGAACAAGATTCTGCAAGAAAGTCGAAAGCTGCAAGACGACTGTCATTT GGTAAGAATAGTCACCCTAATAATCCAACGGCTGCTGAGAAAAACTCTTGTCCAGATTTATGGACCCCTATAGAAAGTGATAGACAAAGGTTACCACAAA ATCGTGGTGATCCAATTATAGATGATAAGCATGAAAAAGTGCCTGTAAAACCCAGGAAAAATCTCTTAGAGGAGGCTTTTACACTGAGAGCTGCAGGAAA ATCCACTAGGTTTCCATTTGAAGAGGAGATATCACATTGCGGTGGAAGTGGAACACCACTTTCTAAAGCCATCCATTCTGCTCATCCACAACCAGGTTCA CCCTGGACAATAGAGTTTCTTAACAGAGTAAGGGAAAAGAGCAGATTGCGGCAGCAGTCCCTTCCACCTGATACATGTACTCCAGATTTTTGGAATTCAG GAAATACATCAAAGGCTACTGAGAGAAGAAGCCTGTCTATTCTTGATTTTTTCAAGTACCAGGGAGGAAGCACTCCTAGAAAAGTATATGAGCAGAAGAA GCAGAAACAACCTATTCAATTGTCAAGTTCATCCCAGAAGGAAAGAACTTCCGCATCCCTAATTCCATCATGGACACCCAAGGATAAGAGATCAAAACAG ACTTTATCCTTTGCAATGGATGGTGGAAACCAAACTAGGCTGGTCTGGAGTGATGGAAGTGCCCACCGTATGAGCAAAAAGCTCAGGAGAAATTGA
AA sequence Show only first row Show all	>Potri.012G141100.1 pacid=42784162 polypeptide=Potri.012G141100.1.p locus=Potri.012G141100 ID=Potri.012G141100.1.v4.1 annot-version=v4.1 MRTRFLNTDYFSSSPVDTLSFLNLPVTHLAPPTPPEQELHRLLRFFHPLETLSLPIERPPIDSALSKFISSVLPHFIDFDFRDFLPDRFHQKEEEIERGF GTDSAQEKDNGNNKHSERLEVIQLEAPEIDTFMENVCFSDEGMQLLSEVSEIENDLDLLRPEIEMQYPDKVQESVYSVEDVTLEFDMDEKACALEYDGSV QEQAHFHHNTFPLLEVEEMSLRTFTNPSMEDEFLLFLEHVESKWGQENILHIDGNELLGSMHFDILEFLSKHCPEKQCLEPELASLDTSLGMDIISMVEI PQGREDSADCLSPMNPVIFQEFKFLETDSSQFYEVFFEMQSTDEPQTCDSMFREDMNFKNFDELIVSCELTLEDDTFKSLPIPIFSDPDKISSIYAIMKE KLAELKPQPLSASHGIYLDWHLLEEDNYNGKNSSIYQKMLEELDSHNIDFDRESFDGGKLVIDLVFSDNGLSGAHMEEHKELLNVISETPNSGLVEGASS ESLDRRQETGNRETLIGENARKASLLFNSTSQFNDLDYFLNPGKATARGKNESTVKIPDTRASFPKGSKSHSVPGMNENINDQKLEELLNLAPIEDKFNM TSSEAADKAEACSIPLQLPYAPYATKTEKTQGDMIYFPDIVIIVNTQNFDKEMIVSRRSTYQRILAMEKEGAQVVERDLNLPVDVIISSSICLVWYDCGN IGKKATAADEASSCLPLCIENIAANVLTLLSFAFSGCILVFEGETRFLSTVMEFSDGLYAAAASLGIDLQLFSSYSAELTDEIILNSILYATKSSRGRYP KMPESETLAESFLTKFPSINPLTAHAILSSGGMLIEFLEWSHERRILAVQQYHVPVESVALFSALCKYGEREDSRSIMTDCSSSASSCPDSDKLHLHIDS ERKRRKCINSLQKIDIQVDDMWKSESLNQFTDGMLDPGVFKQYDCWTSTDPEMLGELKQPSSSLKDLFGQKQVPDIAPVMDFPTSIKPLYSGNFKDPLIR DDRRQPRLPLNDIFLGQNRASEINIKKELKLDSGNPCKSNANNLHEYFRGEVIDLTDDPVSLEKDVASIANSTYFSPWMPDTDIEQDSARKSKAARRLSF GKNSHPNNPTAAEKNSCPDLWTPIESDRQRLPQNRGDPIIDDKHEKVPVKPRKNLLEEAFTLRAAGKSTRFPFEEEISHCGGSGTPLSKAIHSAHPQPGS PWTIEFLNRVREKSRLRQQSLPPDTCTPDFWNSGNTSKATERRSLSILDFFKYQGGSTPRKVYEQKKQKQPIQLSSSSQKERTSASLIPSWTPKDKRSKQ TLSFAMDGGNQTRLVWSDGSAHRMSKKLRRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Potri.012G141100 [exp]	0	1
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.007G086750 [exp]	6.78	0.7423
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182166 [exp]	13.26	0.7246
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G185100 [exp]	15.49	0.7240
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184100 [exp]	20.97	0.7207
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	26.73	0.7161
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184400 [exp]	27.27	0.7135
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	30.28	0.7099
AT5G55980			serine-rich protein-related (....		Potri.001G371400 [exp]	30.59	0.7043
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184300 [exp]	31.49	0.7062
AT1G12200		FMO	flavin monooxygenase, Flavin-b...		Potri.001G121000 [exp]	38.10	0.6772

Compare expression of checked genes

Potri.012G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.