Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 321 / 9e-95 Myosin heavy chain-related protein (.1) AT1G63300 321 / 3e-93 Myosin heavy chain-related protein (.1) AT5G41140 239 / 3e-65 Myosin heavy chain-related protein (.1.2) AT1G22060 136 / 4e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143800 [exp] 823 / 0 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 301 / 1e-86 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 302 / 3e-86 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.005G170066 [exp] 146 / 4e-35 AT1G22060 1031 / 0.0 unknown protein Potri.002G091700 [exp] 137 / 3e-32 AT1G22060 1546 / 0.0 unknown protein Potri.006G120400 [exp] 100 / 3e-21 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 87 / 8e-17 AT1G22060 117 / 5e-26 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027462 [exp] 476 / 5e-152 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 379 / 1e-115 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 352 / 2e-105 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 341 / 7e-102 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10024517 [exp] 344 / 2e-101 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 291 / 2e-82 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 175 / 3e-44 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 150 / 2e-36 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10020915 [exp] 133 / 4e-31 AT1G22060 985 / 0.0 unknown protein Lus10033461 [exp] 132 / 1e-30 AT1G22060 978 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.012G141200.3 pacid=42783858 polypeptide=Potri.012G141200.3.p locus=Potri.012G141200 ID=Potri.012G141200.3.v4.1 annot-version=v4.1 ATGTTCAAGTCATGGAGGAACGTGAAGAAAAAGATCAAAGCTACATTCAAACTGCAATTTCAGGCAACTCAGGTGCCACGCCAAAAGAAACCTGCCTTGA TAATATCCTTGGTGCCAGAGGATGTTGGGAAGACAACATTCAAACTAGAGAAAGCTGCAGTTCAGGATGGAATCTGTTCATGGGACAATCCAGTTTATGT GACAGTGATACTCATCAAGGAGCCAAAATCAGGAAAGCTGCATGAGAAAATATACCATTTCATTGTTTCAAGTGGGTCATCCAAATCAGGTTATCTGGGA GAAGCTTCGATTGACTTTGCAGATTTTGCTGATGAAACTGAACCATTGTCTGTCTCCCTGCCCCTTAAATTTGCCAACTCTGGTGCAGTTCTACATGTGA CCATTCAGAAGATGCATGGAGATTTTGATCCAAGAAAAATTGAAGACAATGAAGATCCCATACTTTCTAAAGACAGAAGCTTGAAGAACCAGCTGAGCAA TGGCTACACAGACAAAAACGATGAAAGTTTTACTGAAGACCAGGACCCGGACATTGTTTTATCTGAACAAGACAGCAGCTTCAGAACATCCATTGGTGGA AATTCTAGCTTCAAATCAACACTCAGACAAGATTCAATGCCTCCAAAGGGAGCAGTTGATGGCATCACACCGAAAAACCACTTGCATTGTAGGACAAGCA CTGATTGGTCAATGGGTTCAGTGTCAGACGGAAGGTTAGTTGACTCAACAAACAGCCCTGAAGAGAACCTTCCAAGAGAATTACAAGAAACCTCAGATGA ATCCATTGAAAAACTGAATAGTGAATTATCTAATCTAATGAGGCAGTCAGAATTATCAGAACTGGAATTACAGACTCTTCGGAGACAGATTACAAAGGAG AGCAGAAGGGGGCAGGATTTGTCAAGACATGTTAAGGAACTTGAAGAGGAGAGAGATGCACTCAAAACAGAATCAGAACTGGAATTACAGTCTCTTCGGA AACAGATTACAAAGGAGAGCAGAAGGGGGCAGGATCTGTCAAGACATGTTAAGGAACTTGAAGAGGAGAGAGATGCACTCAAAACAGAATCAGAACTGGA ATTACAGTCTCTTCGGAAACAGATTACAAAGGAGAGCAGAAGGGGGCAGGATCTGTCAAGACATGTTAAGGAACTTGAAGAGGAGAGAGATGCACTCAAA ACAGAATCAGAACTGGAATTACAGTCTCTTCGGAAACAGATTACAAAGGAGAGCAGAAGGGGGCTGGATCTGTCAAGACATGTTAAGGAACTTGAAGGGG AGAGAGATGCACTCAAAACAGGATGTGAACAACTCAAGTGCTCAAATGAAGGAGAATCCCTGAATCAATTGCGAGCTGAGAATGAGGATTCTAGGGTTCA GCTAGAAGAAGTCAGGCGAGAACTTAGTCATCAAAAGGAATTGAACACCAATCTTAAGTCGCAACTCCAGAAAACGCAAGATTCAAATGCTGAGTTGATT CTTGCTGTGGGAGACCTTGATGAAATGCTGGATCAAAAAAATGTGGAAATATCTTCTCTGTCTAGCAAGCTTGATGAGGTTCAGGAGGAAAATTGCAAAT GCAGCAAGAAAGAGGACAGAGACCAACAAGCAGTGCTTGCACTGGAAGAAAAGACTAGGGAAGATAATGAATTATGTCTACTGAAGCAAAGGGTGATAGA CCTATCTGATGAAATTGATGTCTACAGGGAAACTAGAGAAAAGCTGGAGAATTATATCGAACAACTCACACAAGACTGTGAAGATCTAAAGAGAGAAAAC CATGATATCTCTTCCAAGTTAGAGCAGGGCAAGCTACAAGAACACAAAACCTCAGAATGTTCAGCTACTATTAAAGAACTTGAATCACAGGTACAAAGAT TAGAGGAAAAATTGAAGACGCAGACAAAAGAATTCTCAGAATCTTTGCTTTCCATCAACGAACTGGAAAGTCAGGTCAAAGGGTTGGAGAAAGAACTGGG AAAACAGGCACAAGGATACGAAAATGACCTCGATGCCATGACACATGCCAGAATTGAGCAGGAACAGAGAGCTATCCGTGCAGAAGAGGCCTTGAGGAAG ACAAGGTGGAAAAATGCTGTTACAGCAGAGCAGCTACAGGAGGAATTCAGAAAACTTTCAGTGGAAATGGCAGGAAAGGTTGATGAGAATGAGAAGCTGA CAATGGAATCAGTATTTGAAGCAAACGAGCTCCGAATACAGAATAGAGTTCTAGAAGAGAATCTTAAGAAATCTAACGAAGAGCTTGCAATGATGACGGA CCAGAACAGAGTAAAAATGGAAGAATTGTCAATGCAACTAGATTTGAAAACAAAACATATGGAGCAGATGTCAGTGGAACTAGAAGATGCTTCCAACAAA CTGAAGCATGGAGGAGAAATGCAAGAGGCTTTTCTAGCGGAAGTTCGAATGCTGAAAAGTGAGATAGAGACCCTAAGAAAAGAGAAGAATGACATCTCTG AACTGGAAAAAGAAGTGAAATTAAGAGATGAAACTGAAAAATTGAAGACATCGTCTGAAGAAACAAAGATACTAACAGAAATACAGAAAAGTGAAAGAGA CGAAATAGAAGAAATATTTGCATTGACAAAGAACGAGGCAGAAAACACGAGGCAAGAATTATTCAATTTGAAGTCCTTAAAGGATGAAAAGGAGGCAATG ATCAAGAACCTTTCATTGGAACTTCAAAGCCTCAGAGATCTGCAGATTGAGCTAAAAAATAGCCTGTCCGCAGAAGAACAGGAGAAAGAAAAACTTCAGC AACAAGTACTCGAATTAAAAGGTAAGCTGCAGAAGAAGGAACAGGAAAATACTAGTTTCATGAAGAAACTCACATTTTCAGATGAAAAGAACTCGGTGCC AATGGATGACAGAATGCAGATCAAATGTGCTGCAACTAATACTGCAAATGTCAATGACTTCCAAAAAAGAAATATTGGGGAAGACTTGCTGAATTCTGAG ATGCACACTGCAGGAAGCAAGGGTATTGAAAGAGAAGCAAAAACTTGCTCGAAGGAAGAACTGAGAGTTGGCACTTTCCACTCAATGGATGAGGGTTACC TGATTGAACTGTTGACAGAAATGGCACAGCTAAAAGAAAGGAACAAATGTATGGAAACTGAGTTAAAAGAAATGCAAGAGAGATATTCAGAGATAAGCCT CAAACTTGCAGAAGTAGAAGGTGAAAGGCAACAGCTTGTCATGACTGTACGCAATCTCAAGAATGGTAAGAGGAGCTAG
AA sequence Show only first row Show all	>Potri.012G141200.3 pacid=42783858 polypeptide=Potri.012G141200.3.p locus=Potri.012G141200 ID=Potri.012G141200.3.v4.1 annot-version=v4.1 MFKSWRNVKKKIKATFKLQFQATQVPRQKKPALIISLVPEDVGKTTFKLEKAAVQDGICSWDNPVYVTVILIKEPKSGKLHEKIYHFIVSSGSSKSGYLG EASIDFADFADETEPLSVSLPLKFANSGAVLHVTIQKMHGDFDPRKIEDNEDPILSKDRSLKNQLSNGYTDKNDESFTEDQDPDIVLSEQDSSFRTSIGG NSSFKSTLRQDSMPPKGAVDGITPKNHLHCRTSTDWSMGSVSDGRLVDSTNSPEENLPRELQETSDESIEKLNSELSNLMRQSELSELELQTLRRQITKE SRRGQDLSRHVKELEEERDALKTESELELQSLRKQITKESRRGQDLSRHVKELEEERDALKTESELELQSLRKQITKESRRGQDLSRHVKELEEERDALK TESELELQSLRKQITKESRRGLDLSRHVKELEGERDALKTGCEQLKCSNEGESLNQLRAENEDSRVQLEEVRRELSHQKELNTNLKSQLQKTQDSNAELI LAVGDLDEMLDQKNVEISSLSSKLDEVQEENCKCSKKEDRDQQAVLALEEKTREDNELCLLKQRVIDLSDEIDVYRETREKLENYIEQLTQDCEDLKREN HDISSKLEQGKLQEHKTSECSATIKELESQVQRLEEKLKTQTKEFSESLLSINELESQVKGLEKELGKQAQGYENDLDAMTHARIEQEQRAIRAEEALRK TRWKNAVTAEQLQEEFRKLSVEMAGKVDENEKLTMESVFEANELRIQNRVLEENLKKSNEELAMMTDQNRVKMEELSMQLDLKTKHMEQMSVELEDASNK LKHGGEMQEAFLAEVRMLKSEIETLRKEKNDISELEKEVKLRDETEKLKTSSEETKILTEIQKSERDEIEEIFALTKNEAENTRQELFNLKSLKDEKEAM IKNLSLELQSLRDLQIELKNSLSAEEQEKEKLQQQVLELKGKLQKKEQENTSFMKKLTFSDEKNSVPMDDRMQIKCAATNTANVNDFQKRNIGEDLLNSE MHTAGSKGIEREAKTCSKEELRVGTFHSMDEGYLIELLTEMAQLKERNKCMETELKEMQERYSEISLKLAEVEGERQQLVMTVRNLKNGKRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52280			Myosin heavy chain-related pro...		Potri.012G141200 [exp]	0	1
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	3.60	0.8670
AT2G45590			Protein kinase superfamily pro...		Potri.014G072900 [exp]	6.00	0.8170
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	10.90	0.7988
AT3G54630			unknown protein		Potri.001G208700 [exp]	11.66	0.7731
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	14.14	0.6703
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.007G022600 [exp]	14.14	0.8180
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	20.34	0.7666
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	23.68	0.7899
AT1G12380			unknown protein		Potri.012G129100 [exp]	24.39	0.7182
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.001G316400 [exp]	26.26	0.7915

Compare expression of checked genes

Potri.012G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.