Plant FIBer expression Database

Potri.012G141300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52300 164 / 2e-43 LTI65, RD29B RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
AT4G25580 140 / 2e-35 CAP160 protein (.1)
AT5G52310 51 / 2e-06 LTI140, LTI78, RD29A, COR78 RESPONSIVE TO DESSICATION 29A, LOW-TEMPERATURE-INDUCED 78, COLD REGULATED 78, low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) (.1)
AT3G46750 50 / 3e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G143950
[exp]
522 / 0 AT5G52300 92 / 1e-19 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
Potri.009G035300
[exp]
46 / 6e-05 AT3G46750 170 / 1e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038862
[exp]
117 / 3e-27 AT5G52300 76 / 8e-14 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
Lus10014982
[exp]
48 / 2e-05 ND 47 / 4e-05
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07918 CAP160 CAP160 repeat
Representative CDS sequence
>Potri.012G141300.1 pacid=42783258 polypeptide=Potri.012G141300.1.p locus=Potri.012G141300 ID=Potri.012G141300.1.v4.1 annot-version=v4.1
ATGGAATCACAAATGGCACGCCCGCATGGTGTTCATGACTATGAGCATGACCCCAACAATGTTGGACTGCATCCTGTGGTAGAGGGTGAAGATGGATATC
AGCATGAGAAGAAGTCAGTGTTGAAGAAGGTGATGGATAAAGCCAAGAAATTGAAGGACAAAGTCAAATTACATGGTCATGGCCATGACTATCATGAGGG
TCATGTGCCTGATGATCATGACTTGTATGAGGAAGATGATGATGAGGATGAAGAAATGGTTGAGGACCCAGAAGTTCATGGCGCATCAGCCTACGATTCT
GCTGCTATTAGGAACTCTGTGCAAGGACAAGGTCTGGGGCTAGGTAACCCTAGGACATCTTATGGAAATCCAACAACAATGCAAAAGGAACATACAGGCA
CTGATCCAATGAAGAGCTTTCTTCCTGGGCAAGAGGTTCTTGTTGGAAGGACAACTGCTATAAAAGAAGTACCCCATGCCCCAGTTAATTCACCTGCATA
TGTTTCTCCAGCAACAGTTGAACAAAGAAGAGATGCTTATCCTGTTAAGGGTTTTGTTCATGAACAAGAAAGGATTCGAGGGCAACCTGAAGTTAATTTG
AAAATACCAGTAGGATTGGAGGAGGATCCTCATGCTCCAAAGGGTAGACTTGGTGATCATGCTCCTTCGAATTATCAGACTAAAGTCACTGATCCAACTG
GTTCTGGTGGGAAAGAAGCAGGAATAACGCCAATTCTTTACTCTTTCGACAAAATGAATATCTATGATGAATCAAGAGGAGAAAAACAGAACTTATCAAC
TGGATCGCGTGATGGTCAGCTCTCCTTGCTTCCTACCGGAAGCCATGACCAATTTTCTGCAGAACCAACTCCCCCAATATCCATTAGTTCCCAAGAGAAC
CCTGTATCAGGTTCAAAGTCTTTTGTCACCTTGAAATCCAAGGAGCACACACTTGGTGGCATCGGTGATAAACCACCAAATCAGAGTGGCTACACTGAAA
AAATCTCCTCTGCCACTTCTGCAATTGTTGACAAAGCAAAAGCTGCCACAAATGTCATGGCCTCCAATCTTGGATATGGAGAGAGAGACAATAATATTAA
AGAACATACAATGACACATGAAGGACAAGGACAAAATGCTGCGAAGCCAGCATCGACAGTTGAATATGGAAAGAAAATTGCAACAACTGTGACTGAGAAA
CTCACTCCAGTGTATGAAAAAGTTGCTGGTGTAGGCAGTACTGTAATGTCAAAACTCCATGGCAATACAAATGCTAGCACTAATACCTGCAATGAAGCAG
AAAGCAGGATTGAAGGGAAAGATAAAGGGGCGTCAGTGAAGGACTATTTCGCAGAGAAGCTGAGGCCAGGAGAAGAAGATAGGGCGCTTTCTGAAGTTAT
TTCGGAGACTTTGAACAAGGGAAAGACTGAGACAGGGATGTGGAAGAACGGTAGGCCAATGGGAAAAGTGACAGACTCAGAGGAGGTGGAGAAAAGGTTA
GGTAGTGGAGAAGAAGAGAATTCTGACGAAATAACGGATTCGGTCTCTGTGCATATTCCTGCCAAGGGTGTGGTTGATAAGCTCAAAGGTGCTGTTGGTT
CTTTGTTTGTCAAAAGTGAAGAATCTAGGGCATCTCAGCAGCATCCACTTAGTTCCTCCAATGCTGGTGCTGAAGGGTTTCCTTCTACTTATGCTAGTGG
TGAAGAAATAGGAGAGAAGAGACTTCAAGAGACAGGAAACTGA
AA sequence
>Potri.012G141300.1 pacid=42783258 polypeptide=Potri.012G141300.1.p locus=Potri.012G141300 ID=Potri.012G141300.1.v4.1 annot-version=v4.1
MESQMARPHGVHDYEHDPNNVGLHPVVEGEDGYQHEKKSVLKKVMDKAKKLKDKVKLHGHGHDYHEGHVPDDHDLYEEDDDEDEEMVEDPEVHGASAYDS
AAIRNSVQGQGLGLGNPRTSYGNPTTMQKEHTGTDPMKSFLPGQEVLVGRTTAIKEVPHAPVNSPAYVSPATVEQRRDAYPVKGFVHEQERIRGQPEVNL
KIPVGLEEDPHAPKGRLGDHAPSNYQTKVTDPTGSGGKEAGITPILYSFDKMNIYDESRGEKQNLSTGSRDGQLSLLPTGSHDQFSAEPTPPISISSQEN
PVSGSKSFVTLKSKEHTLGGIGDKPPNQSGYTEKISSATSAIVDKAKAATNVMASNLGYGERDNNIKEHTMTHEGQGQNAAKPASTVEYGKKIATTVTEK
LTPVYEKVAGVGSTVMSKLHGNTNASTNTCNEAESRIEGKDKGASVKDYFAEKLRPGEEDRALSEVISETLNKGKTETGMWKNGRPMGKVTDSEEVEKRL
GSGEEENSDEITDSVSVHIPAKGVVDKLKGAVGSLFVKSEESRASQQHPLSSSNAGAEGFPSTYASGEEIGEKRLQETGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52300 LTI65, RD29B RESPONSIVE TO DESSICATION 29B,... Potri.012G141300
[exp]
0 1
AT2G36640 ATECP63 embryonic cell protein 63 (.1) Potri.015G060600
[exp]
1.00 0.9553 ATECP63.1
AT2G21490 LEA dehydrin LEA (.1) Potri.004G158500
[exp]
2.44 0.9212
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Potri.009G081400
[exp]
2.82 0.9121
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Potri.016G046350
[exp]
3.00 0.9137
AT3G18950 Transducin/WD40 repeat-like su... Potri.009G109500
[exp]
5.00 0.9081
AT1G07900 AS2 LBD1 LOB domain-containing protein ... Potri.008G043900
[exp]
5.29 0.8938
AT4G31830 unknown protein Potri.006G183800
[exp]
6.32 0.8892
AT5G50360 unknown protein Potri.015G091900
[exp]
6.48 0.8547
AT2G21820 unknown protein Potri.010G176200
[exp]
7.07 0.8109 PM41.1
AT1G04560 AWPM-19-like family protein (.... Potri.010G064200
[exp]
8.71 0.8297

Potri.012G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.