Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55630 391 / 8e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60050 374 / 3e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60040 117 / 2e-28 F-box family protein (.1) AT2G06000 97 / 1e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G65560 92 / 4e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 90 / 3e-19 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT2G17140 89 / 6e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G22960 89 / 6e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 87 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 87 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144100 [exp] 591 / 0 AT1G55630 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G032100 [exp] 107 / 2e-25 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 107 / 3e-25 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 106 / 9e-25 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 105 / 1e-24 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 105 / 2e-24 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G074500 [exp] 101 / 2e-23 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074700 [exp] 100 / 5e-23 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 100 / 5e-23 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027465 [exp] 402 / 3e-138 AT1G55630 569 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014983 [exp] 363 / 6e-123 AT3G60050 534 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038863 [exp] 363 / 7e-123 AT3G60050 536 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039221 [exp] 356 / 8e-121 AT3G60050 452 / 4e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 96 / 4e-21 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 94 / 1e-20 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 93 / 2e-20 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10026558 [exp] 93 / 4e-20 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024962 [exp] 91 / 1e-19 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 87 / 2e-18 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.012G141400.1 pacid=42783269 polypeptide=Potri.012G141400.1.p locus=Potri.012G141400 ID=Potri.012G141400.1.v4.1 annot-version=v4.1 ATGAACTCTGTAGCTTTATTTGGTACGAGGGTAGTTCATAAATTATCATGCTTTCTTTTCATTTCGAGAAAGTTATGTGATTGTAGTTTTGATGGTGGTG ATAAGAATGATAATGGGTTTCAATACGTTGAGGAACCCTTAAAGAGAATACGTGATTATTTTGAGAGCACAAGAATTGATGCTTATAGAGTTCTTGATAT TCTAAGACGAGATGGCCCTGGATTCGATGCAAAAAGGGCTTTAAGTGAGTTAAAGATAAGGGTTTCGTGGCTTCTTGTGAGGGAAGTTCTTACAGGATTT TTGAGGAACATAAATGAGGAGAATAAAACCAGGTGTGCTAAATTGGGTTTTTCATGTAAAACCAGATATTTGCAATGTGAGGAGTTTAGGGCAATGTGGA GACTAGCAGATGAGATGATTGAGAAGGGGTTTCACACTACAGCACAGACATTTAATATATTAATTTGTACTTGCGGTAAGGCTGGTTTGGCTATGAATGT TTTGGATAGGTTCATTAAGTCAAAAACATTCAATTTTAGGCTGTACAAGAGTTCTTATAATGCAATTCTGCATTCACTGCTTTATATGTTGGATGAGCAT CATTCCCCAGATGTTCTTACTTCTAATGTTATTTTTTATGCAAAATTGAGGTTGGGGAAGGCACCTGAGTTTCATAGATTGCTTGATGAAATTATTGGTT ATGGAATTTTTCCAGATTTTCATACCTATAACATCCTTCTACATGAGGCAGGTATTGACCCTACCATTCTTCATTACACTACGTTGATAGATGGACTGAG TTGGGCTGGGAATTTACTTGGCTGGCAGTATTTTTTTGATGAAATGATAAAAACTGGATGCATGCCAGATGTTGTTTGTTACACTGTAATGATCACAGGA TATATAATGGCAGGTGAGCTTGAAAAGGCTCAGGAAATGTTTGAAGACATGATGGTCAATGGCCAATCACCAATAGGATGCAATCCTGATTTTCATGTTT ACAGAACCCTAGTAAGAAATTTGTGGAATGCTGGAAAGCTTTCTGAAGCTCATGAAGTGATAAAGCAGATGATAGAGAAAGGGAAATACAGCCATCTAGT CGCAAAGATCAAAGGATACAAGGGATGCTGA
AA sequence Show only first row Show all	>Potri.012G141400.1 pacid=42783269 polypeptide=Potri.012G141400.1.p locus=Potri.012G141400 ID=Potri.012G141400.1.v4.1 annot-version=v4.1 MNSVALFGTRVVHKLSCFLFISRKLCDCSFDGGDKNDNGFQYVEEPLKRIRDYFESTRIDAYRVLDILRRDGPGFDAKRALSELKIRVSWLLVREVLTGF LRNINEENKTRCAKLGFSCKTRYLQCEEFRAMWRLADEMIEKGFHTTAQTFNILICTCGKAGLAMNVLDRFIKSKTFNFRLYKSSYNAILHSLLYMLDEH HSPDVLTSNVIFYAKLRLGKAPEFHRLLDEIIGYGIFPDFHTYNILLHEAGIDPTILHYTTLIDGLSWAGNLLGWQYFFDEMIKTGCMPDVVCYTVMITG YIMAGELEKAQEMFEDMMVNGQSPIGCNPDFHVYRTLVRNLWNAGKLSEAHEVIKQMIEKGKYSHLVAKIKGYKGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.001G277400 [exp]	5.65	0.7820
AT2G34930			disease resistance family prot...		Potri.015G025300 [exp]	12.00	0.7629
					Potri.006G120901 [exp]	12.84	0.7821
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	17.54	0.7121
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	19.59	0.7303
AT2G19680			Mitochondrial ATP synthase sub...		Potri.018G055501 [exp]	21.54	0.7352
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201900 [exp]	24.49	0.7040
AT1G47578			Biotin/lipoate A/B protein lig...		Potri.002G131000 [exp]	25.78	0.7152
					Potri.010G183951 [exp]	25.98	0.7217
AT1G55690			Sec14p-like phosphatidylinosit...		Potri.001G471300 [exp]	27.23	0.7266

Compare expression of checked genes

Potri.012G141400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.