Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23760 92 / 1e-25 Copper transport protein family (.1) AT1G01490 49 / 4e-08 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 41 / 2e-05 Copper transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144200 [exp] 100 / 3e-28 AT5G23760 96 / 2e-26 Copper transport protein family (.1) Potri.001G099500 [exp] 56 / 5e-11 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 53 / 9e-10 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 52 / 1e-09 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 52 / 1e-09 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 52 / 4e-09 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 50 / 6e-09 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 50 / 8e-09 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 49 / 1e-08 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039224 [exp] 79 / 9e-21 AT5G23760 81 / 1e-21 Copper transport protein family (.1) Lus10027468 [exp] 65 / 3e-13 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10001485 [exp] 55 / 5e-11 AT5G23760 54 / 9e-11 Copper transport protein family (.1) Lus10028762 [exp] 50 / 9e-09 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 50 / 1e-08 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 50 / 3e-08 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 50 / 3e-08 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 48 / 9e-08 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 44 / 2e-06 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 43 / 3e-06 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G141500.1 pacid=42783359 polypeptide=Potri.012G141500.1.p locus=Potri.012G141500 ID=Potri.012G141500.1.v4.1 annot-version=v4.1 ATGGCTCAGCAGAAGGTGGTGTTGAAGGTATTGACCATGACTGATGTTAAGACAAAGCAGAAAGCTATAGAAGCTGCTGCTGATATTTATGGAGTTGATT CCATAGCAGCAGATCTAAAAGATCAGAAGCTAACAGTGATAGGTCAGATGGATACAGTGGCAGTGGTGAAAAGGCTGAAGAAAGTAGCGAAAGTGGACAT AATCTCAGTTGGACCTGCAAAAGAAGAGAAGAAAGAAGTGAAAAAAGAAGTGAAAAAAGAGGAGAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGGAGAA AAGAAAGAGGAGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.012G141500.1 pacid=42783359 polypeptide=Potri.012G141500.1.p locus=Potri.012G141500 ID=Potri.012G141500.1.v4.1 annot-version=v4.1 MAQQKVVLKVLTMTDVKTKQKAIEAAADIYGVDSIAADLKDQKLTVIGQMDTVAVVKRLKKVAKVDIISVGPAKEEKKEVKKEVKKEEKKEEKKEEKKGE KKEEKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	0	1
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	6.32	0.7379
AT2G24960			unknown protein		Potri.017G120900 [exp]	7.07	0.7214
AT5G47530			Auxin-responsive family protei...		Potri.010G156200 [exp]	11.83	0.6999
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022300 [exp]	25.78	0.6810
AT1G76660			unknown protein		Potri.005G260000 [exp]	33.09	0.6857
AT2G28580			Plant protein of unknown funct...		Potri.014G054200 [exp]	38.36	0.6508
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	39.34	0.6657
AT3G09320			DHHC-type zinc finger family p...		Potri.016G100200 [exp]	40.14	0.6646
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	53.44	0.6625
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Potri.017G135200 [exp]	66.33	0.6477

Compare expression of checked genes

Potri.012G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.