Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52400 622 / 0 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT5G38450 310 / 1e-99 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT1G67110 299 / 2e-95 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT2G26710 296 / 2e-94 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G24910 291 / 5e-92 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 290 / 7e-92 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G46950 287 / 2e-90 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 284 / 2e-89 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT2G46960 282 / 6e-89 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14690 280 / 2e-88 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145100 [exp] 852 / 0 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 335 / 3e-109 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 327 / 2e-106 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026200 [exp] 325 / 1e-105 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 320 / 2e-103 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 318 / 5e-103 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 318 / 1e-102 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.013G160800 [exp] 314 / 3e-101 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 302 / 2e-96 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039234 [exp] 695 / 0 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10027480 [exp] 459 / 8e-160 AT5G52400 424 / 6e-146 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 322 / 2e-104 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 321 / 7e-104 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 302 / 3e-96 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10008423 [exp] 293 / 6e-93 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 290 / 6e-92 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10036822 [exp] 286 / 2e-89 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 280 / 3e-88 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026084 [exp] 280 / 4e-88 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.012G142000.1 pacid=42783988 polypeptide=Potri.012G142000.1.p locus=Potri.012G142000 ID=Potri.012G142000.1.v4.1 annot-version=v4.1 ATGGGAGTGTTAATATTTCAAGTGCTTATTTTCTCCTTTCTTGGTAGTTTTTTTAACGTAATATGGAGAATATTGTTTTCTTGCTGGATTTTGCCTGGTA GGGCGCATATGAAGCTAAAGAAAAATGGGTTTCGAGGTCCAACACCAAATTTCCCTTTAGGAAATCATAGGGAAATCAAAAGGATTAGTAGGGAAGCAAC AGTTTCTTCTTCTTCTTCTTCTGGGTCCTCAAAAATCTCTAATGATATTCATTCTTCAGTTTTTCCCTACTTCTCTCAGTGGCAGAAGTCTCATGGGAAA GTATTCATTTACTGGTTAGGTACAGAGCCATTTTTGTACATAGCAGACCCAGATTTCTTGAAAGAAATGACTTCAGGGGTGATGGGCAAGAGTTGGGGAA AGCCTCGAGTGTTTAAACATGATAGAGAACCCATGTTTGGTAATGGTTTGGTCATGGCTGAAGGTGATGAATGGGTTCGCCACCGCCATGTTATCACTCC TGCATTCTCTCCAGCCAACTTGAAGGCTATGTCAAGCTTAATGGTGGAGTCCACCACAAAGATGCTAGACAAGTGGACTGGCCTCATAAATTCCGGCAAC CATGAAATAGATGTGGAGAGAGAAATCACGGCGACGGCCGGAGAGATCATAGCCAAGGCAAGCTTTGGCATAAGCTATGAAAATGGGAGCAAGGTGTTTG AGAAATTAAGGGCAATGCAAATCACTCTGTTTAAATCAAACCGTTATGTGGGGGTACCCTTTAGCAAGCTCATATCCCCTAAAAAAACCATCGAGGCCAA AAGGCTTGGAAATGAAATTGATGCTCTCCTCTTATCTATCATAAAAGCTCATAAAAATTCTAATGATGGGTGTCCTCAAAAGGATTTGCTAGGGTTATTG CTCCAAGAGGATCATGTAAATGGAATGTCAGGGAAGATGCTAACAACAAGGCAATTGGTCGATGAGTGCAAGACTTTCTTCTTTGGTGGCCACGAGACCA CAGCTTTGGCTCTATCATGGACATTGCTGCTTTTGGCTATGCATCCAGAGTGGCAAAACAAATTGAGAGAGGAGATTAGAGAAGTTACAGGGGATAAAGA AATTGATTTCACGAAGGTTGCTGGACTGAAGAAGATGGGGTGGGTGATGAATGAAGTTTTAAGACTCTACCCGCCATCGCCTAATGTACAGAGGCAAGCT AGAGCAGATATTCAAGTAAATGACCTCTTAATACCAAATGGGACCAACATGTGGATTGATGTTGTAGCCATGCACCATGACCCTAAACTATGGGGAGAAG ATGCGAACGAGTTTAAACCAGAGAGGTTCAAGGATGACTTGTATGGTGGATGCAGACACAAGATGGGGTTTCTGCCTTTTGGGTTTGGAGGAAGAATGTG CATTGGCAGGAACTTGACAATGATGGAGTATAAGATTGTGCTAACCTTGATTCTCACTAGGTTTTCATTCTCTGTCTCTCCAACATACAGTCATTCTCCA GCTATTTTGCTTTCCTTGAGGCCCGGCAATGGCCTGCAACTCATTCTCCAGCCCATTTAG
AA sequence Show only first row Show all	>Potri.012G142000.1 pacid=42783988 polypeptide=Potri.012G142000.1.p locus=Potri.012G142000 ID=Potri.012G142000.1.v4.1 annot-version=v4.1 MGVLIFQVLIFSFLGSFFNVIWRILFSCWILPGRAHMKLKKNGFRGPTPNFPLGNHREIKRISREATVSSSSSSGSSKISNDIHSSVFPYFSQWQKSHGK VFIYWLGTEPFLYIADPDFLKEMTSGVMGKSWGKPRVFKHDREPMFGNGLVMAEGDEWVRHRHVITPAFSPANLKAMSSLMVESTTKMLDKWTGLINSGN HEIDVEREITATAGEIIAKASFGISYENGSKVFEKLRAMQITLFKSNRYVGVPFSKLISPKKTIEAKRLGNEIDALLLSIIKAHKNSNDGCPQKDLLGLL LQEDHVNGMSGKMLTTRQLVDECKTFFFGGHETTALALSWTLLLLAMHPEWQNKLREEIREVTGDKEIDFTKVAGLKKMGWVMNEVLRLYPPSPNVQRQA RADIQVNDLLIPNGTNMWIDVVAMHHDPKLWGEDANEFKPERFKDDLYGGCRHKMGFLPFGFGGRMCIGRNLTMMEYKIVLTLILTRFSFSVSPTYSHSP AILLSLRPGNGLQLILQPI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.012G142000 [exp]	0	1
AT4G37290			unknown protein		Potri.007G049400 [exp]	1.73	0.9879
AT5G37490			ARM repeat superfamily protein...		Potri.012G042600 [exp]	3.46	0.9785
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	6.32	0.9783	ACO2,ACO1.1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	6.92	0.9731
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.003G196700 [exp]	18.52	0.9744
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	21.00	0.9714
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.012G096800 [exp]	22.75	0.9696
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027500 [exp]	24.59	0.9708
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.014G098000 [exp]	25.45	0.9331
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	27.27	0.9705

Compare expression of checked genes

Potri.012G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.