Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20850 1936 / 0 TPP2 tripeptidyl peptidase ii (.1) AT5G19660 45 / 0.0004 ATSBT6.1 ,ATS1P SITE-1 protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145300 [exp] 2318 / 0 AT4G20850 1911 / 0.0 tripeptidyl peptidase ii (.1) Potri.018G081400 [exp] 50 / 1e-05 AT5G19660 1570 / 0.0 SITE-1 protease (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039235 [exp] 2025 / 0 AT4G20850 1960 / 0.0 tripeptidyl peptidase ii (.1) Lus10027482 [exp] 2016 / 0 AT4G20850 1956 / 0.0 tripeptidyl peptidase ii (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family PF12580 [poplar] [flax] TPPII Tripeptidyl peptidase II
Representative CDS sequence Show only first row Show all	>Potri.012G142200.1 pacid=42783810 polypeptide=Potri.012G142200.1.p locus=Potri.012G142200 ID=Potri.012G142200.1.v4.1 annot-version=v4.1 ATGCAAATTAGCCCATTATATAATACACCCATCAATTGGGCCAACAAAACCCCATTCTTTTTACACTCTCCATCTTATCTACTTATAAACAAACCCAACA GAAAGCTCTTTCAAAGCAGGAGGAGGAGTCAATACTTTAACACTAGCAAAAGTAATATTAGTAGAAGTGGTGTTTTTTTCAAAGGGATGCCTTGCGATTC AATTGCTAAAACATCTGGTGGTTATGGTGGTGGTGATGAGAACGGGTCTCTGAGGAATTTCAAGCTGAATGAATCAACTTTTTTGGCTTCTTTGATGCCT AAGAAAGAGATTGGTGCTGATCGCTTCATTGAAGCTCACCCTCAATATGATGGCCGTGGTACCATCATTGCTATCTTTGATTCTGGAGTTGACCCGGCTG CTTCTGGATTAGAAGTGACATCAGATGGGAAGCCTAAAGTACTTGATGTTATTGATTGCACCGGGAGTGGAGATATTGATACTTCAAAAGTGGTGAAGGC TGATGCAAATGGTTGCATACAAGGAGCTTTAGGGGCTTCTTTGGTTGTCAATTCTTCATGGAAGAATCCTTCTGGTGAATGGCACGTGGGTTATAAGTTT TTATTTGAGCTACTTACTGGCACATTGACTTCCCGTTTGAAGAAAGAGAGAAAAAAGAAGTGGGATGAGAAAAACCAAGAAGAAATTGCCAAGGCTGTAA AGCATCTGGATGAATTCAACCAGAAACACTCCAATCCAGAGGACGCAGACTTGAAAAGGGTTCGTGAAGACCTTCAAAACAGAATTGATTTACTACGGAA ACAGGCTGATGTTTATGATGACAAGGGGCCTATTATAGATGCTGTTGTATGGCATGACGGAGAGTTGTGGAGGGCTGCTCTTGACACACAGAGTCTTGAG GATGACTCAGATTGTGGAAAGCTAGCTAACTTTGTACCCCTTACAAATTATAGGATTGAAAGGAAGTATGGTGTGTTCAGCAAGTTAGATGCCTGTACAT TTGTTCTTAATGTTTATAGTGATGGGAACATCTTAAGCATTGTAACGGATTGCTCTCCTCATGGAACCCATGTTGCGGGTATTGCTACAGCCTTCCACCC AAAGGAGTCATTATTGAATGGAGTTGCACCTGGGGCACAGTTGATATCTTGCAAAATTGGCGACACACGTTTAGGTTCAATGGAGACAGGCACTGGCTTG ACACGGGCCCTAATAGCTGCTGTGGAGCATAAATGTGATCTCATCAACATGAGTTATGGGGAACCTACATTACTACCAGATTATGGCCGCTTCGTTGACC TTGTTAATGAGGTGGTGAACAAGCACCGTCTTATATTTGTAAGCAGTGCTGGCAACAGTGGTCCAGCATTAAGTACTGTTGGTGCTCCTGGTGGTACAAG TTCAAGCATTATAGGGGTTGGTGCATATGTCTCTCCTGCAATGGCTGCAGGTGCTCATTGTGTTGTTGAACCTCCTGCTGAGGGACTTGAATACACTTGG TCAAGCCGAGGACCAACTTCTGATGGAGATCTTGGAGTAAGTATAAGTGCTCCTGGAGGGGCTGTTGCTCCTGTCCCTACCTGGACTCTTCAAAAACGCA TGCTGATGAATGGAACATCAATGGCCTCTCCATCTGCTTGTGGTGGAATTGCTTTACTTATCAGTGCAATGAAGGCTGAGGGTATTCCTGTAAGTCCATA CAGTGTAAGGAAGGCCCTTGAGAATACATCTGTTCCTGTAGGTGAATCGCCAGCTGATAAGCTATCCACAGGACAGGGGCTTATGCAAGTTGACAGGGCA CATGAATATATAAGGCAGTCCCGGAATATTCCATGTGTTTGGTATGAAATAAAGGTCAATCAATCTGGAAAAACAACTCCTACTTCACGAGGAATCTACC TCAGGGATGCAAGTGCTTGCAAGCAACCTACAGAGTGGACAGTGCAAGTCCAACCAAAGTTTCATGAAGGTGCAAGTAATTTGGAAGAATTGGTTTGCTT CGAGGAATGTATTGAGTTACACTCTACTGAAAAGACTGTTGTGAGGGCTCCTGAGTATCTCCTTCTCACTAACAATGGACGCAGCTTCAACATAGTGGTT GATCCTACCAAGTTAAGTGATGGTTTACATTACTACGAAGTATACGGGGTTGATTGCAGAGCACCATGGCGTGGTCCCATTTTCAGGATCCCAGTCACCA TAACAAAGCCTATGGAAGTGAAGAATCAGCCTCCAGTTGTCTCATTTTCTGGGATGTCTTTTCTGCCAGGGCACATAGAAAGGAGATACATTGAAGTGCC GCTTGGTGCTACTTGGGTTGAGGCAACTATGCGAACATCAGGGTTTGATACTACTCGACGATTTTTTGTTGACACTGTTCAGATTTGTCCCTTACAAAGA CCTTTGAAGTGGGAGAGTGTTGTAACATTTTCTTCTCCTACTGCCAAAAGTTTTGCATTTCCTGTTGTGGGTGGTCAGACAATGGAATTAGCTGTTGCTC AGTTTTGGTCAAGTGGGATAGGAAGTCATGAAACCACTATTGTAGACTTTGAGATTGTGTTTCATGGGATTGCCATCAATAAAGAGGAAATCATTCTTGA TGGAAGTGAAGCCCCTGTAAGAATTGATGCTGAAGCTCTATTGTCATCTGAGAAACTCGCCCCTGCTGCTATTCTGAATAAGATAAGAGTTCCATATCGA CCCGTTGATGCTAAACTTAGCACTCTTATAGAGAGTCGCGACAAACTACCCTCTGGAAAACAGACACTGGCCCTGACGTTAACTTACAAGTTTAAATTGG AAGATGGAGCTGCAGTGAAGCCTCAAGTTCCATTGCTTAATAATCGCATTTATGATACAAAATTTGAATCACAATTTTATATGATTTCTGACACTAACAA GCGTGTATATGCTATGGGTGATGCCTATCCTAATGCTGCAAAACTTCCTAAGGGTGAATACAATTTACGGCTATATCTAAGGCATGACAATGTGCAATAT TTGGAAAAGATGAAGCAGTTGGTATTGTTTATTGAGAGAAACTTGGATGGCAAGGAAGTCATTCAATTGAACTTTTTCTCCGAACCAGATGGTCCTGTGA TGGGAAATGGTGCTTTTAAGTCCTCAGTTTTAGTTCCAGGGAAGAAAGAAGCCATTTACTTGGGCCCACCAGTGAAAGACAAGCTCCCTAAGAATGCTCC ACAAGGATCTATACTGCTGGGATCAATCTCATATGGAAAACTATCATTTGCTGGCGAGGAAGGGGGGAGAAGTCCACAAAAGAACCCTGCATCTTACCGA ATCACTTATGTTGTGCCACCAAATAAGGTTGATGAGGACAAGGGGAAAAGTTCTTCAACTAACTCGAAAACTGTGTCTGAGCGTTTAGAGGAGGAGGTTC GAGATGCAAAGATTAGAGTTGTTTCAAGCCTAAAACAAGACACTGATGAAGAGCGCTCAGAATGGAAAAAGTTATCCGCATCTCTTAAGTCTGAGTACCC AAACTATACTCCACTACTTGCTAAGATTTTGGAAGGCTTGCTTTCTCAGAGTAATGTGGAAGATAAAATTCGTCATCATGAAGAGGTTATAGATGCAGCA AATGAAGCAATAGATAGTATTGACCAAGATGAGGTGGCAAAGTTCTTTTTGCACAAGAGTGATCCAGAAGATGAGGAGGCAGAGAAAATGAAAAAGAAAA TGGAGACAACCAGGGATCAATTGGCCGAGGCACTGTACCAAAAAGGGCTGGCATTGATGGAGATTGAATCTCTAAAGGGTGAGACAGCTGAAACGGAAGG GACAAAAGATTTGTTCGAGGATAATTTCAAAGAGCTGCAAAAATGGGTTGATACAAAGTCCTCGAAATATGGCACCCTCTTAGTGCTACGTGAAAGACGA CGAGGAAGGCTAGGAGCGGCACTAAAGGCATTGAATGAAATGATACAAGATAATGGAGATCCACCCAAGAAGAAGCTGTATGAACTGAAGCTCTCATTGC TCGATGAGATTGGATGGGATCATTTAACAACACACGAGAAAGAGTGGATGCACGTTCGGTTCCCCCCAAGCTTGCCGCTTTTTTAA
AA sequence Show only first row Show all	>Potri.012G142200.1 pacid=42783810 polypeptide=Potri.012G142200.1.p locus=Potri.012G142200 ID=Potri.012G142200.1.v4.1 annot-version=v4.1 MQISPLYNTPINWANKTPFFLHSPSYLLINKPNRKLFQSRRRSQYFNTSKSNISRSGVFFKGMPCDSIAKTSGGYGGGDENGSLRNFKLNESTFLASLMP KKEIGADRFIEAHPQYDGRGTIIAIFDSGVDPAASGLEVTSDGKPKVLDVIDCTGSGDIDTSKVVKADANGCIQGALGASLVVNSSWKNPSGEWHVGYKF LFELLTGTLTSRLKKERKKKWDEKNQEEIAKAVKHLDEFNQKHSNPEDADLKRVREDLQNRIDLLRKQADVYDDKGPIIDAVVWHDGELWRAALDTQSLE DDSDCGKLANFVPLTNYRIERKYGVFSKLDACTFVLNVYSDGNILSIVTDCSPHGTHVAGIATAFHPKESLLNGVAPGAQLISCKIGDTRLGSMETGTGL TRALIAAVEHKCDLINMSYGEPTLLPDYGRFVDLVNEVVNKHRLIFVSSAGNSGPALSTVGAPGGTSSSIIGVGAYVSPAMAAGAHCVVEPPAEGLEYTW SSRGPTSDGDLGVSISAPGGAVAPVPTWTLQKRMLMNGTSMASPSACGGIALLISAMKAEGIPVSPYSVRKALENTSVPVGESPADKLSTGQGLMQVDRA HEYIRQSRNIPCVWYEIKVNQSGKTTPTSRGIYLRDASACKQPTEWTVQVQPKFHEGASNLEELVCFEECIELHSTEKTVVRAPEYLLLTNNGRSFNIVV DPTKLSDGLHYYEVYGVDCRAPWRGPIFRIPVTITKPMEVKNQPPVVSFSGMSFLPGHIERRYIEVPLGATWVEATMRTSGFDTTRRFFVDTVQICPLQR PLKWESVVTFSSPTAKSFAFPVVGGQTMELAVAQFWSSGIGSHETTIVDFEIVFHGIAINKEEIILDGSEAPVRIDAEALLSSEKLAPAAILNKIRVPYR PVDAKLSTLIESRDKLPSGKQTLALTLTYKFKLEDGAAVKPQVPLLNNRIYDTKFESQFYMISDTNKRVYAMGDAYPNAAKLPKGEYNLRLYLRHDNVQY LEKMKQLVLFIERNLDGKEVIQLNFFSEPDGPVMGNGAFKSSVLVPGKKEAIYLGPPVKDKLPKNAPQGSILLGSISYGKLSFAGEEGGRSPQKNPASYR ITYVVPPNKVDEDKGKSSSTNSKTVSERLEEEVRDAKIRVVSSLKQDTDEERSEWKKLSASLKSEYPNYTPLLAKILEGLLSQSNVEDKIRHHEEVIDAA NEAIDSIDQDEVAKFFLHKSDPEDEEAEKMKKKMETTRDQLAEALYQKGLALMEIESLKGETAETEGTKDLFEDNFKELQKWVDTKSSKYGTLLVLRERR RGRLGAALKALNEMIQDNGDPPKKKLYELKLSLLDEIGWDHLTTHEKEWMHVRFPPSLPLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.012G142200 [exp]	0	1
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	1.73	0.7659
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	3.46	0.6860
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	13.49	0.6281
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	19.89	0.5915
AT1G73930			unknown protein		Potri.012G060200 [exp]	24.16	0.6858
AT3G17900			unknown protein		Potri.010G033900 [exp]	30.00	0.6116
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	31.30	0.5418
AT4G27470		ATRMA3	RING membrane-anchor 3 (.1)		Potri.011G051800 [exp]	33.94	0.5963	RING.2
AT4G39860			unknown protein		Potri.005G076000 [exp]	46.28	0.5589
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	56.39	0.5383	CAND1.3

Compare expression of checked genes

Potri.012G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.