Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23870 511 / 0 Pectinacetylesterase family protein (.1.2.3) AT5G26670 408 / 3e-141 Pectinacetylesterase family protein (.1.2) AT1G57590 403 / 1e-138 Pectinacetylesterase family protein (.1) AT2G46930 394 / 2e-135 Pectinacetylesterase family protein (.1) AT3G05910 392 / 6e-135 Pectinacetylesterase family protein (.1.2) AT3G09410 387 / 8e-133 Pectinacetylesterase family protein (.1.3) AT3G62060 380 / 3e-130 Pectinacetylesterase family protein (.1) AT4G19420 375 / 2e-128 Pectinacetylesterase family protein (.1.2) AT3G09405 353 / 2e-119 Pectinacetylesterase family protein (.1) AT4G19410 340 / 6e-115 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145400 [exp] 626 / 0 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.010G004400 [exp] 401 / 4e-138 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 400 / 7e-138 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.013G000900 [exp] 394 / 2e-135 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 393 / 3e-135 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 385 / 2e-131 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.004G234100 [exp] 371 / 3e-126 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 344 / 2e-116 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 335 / 2e-112 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039238 [exp] 509 / 0 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10009966 [exp] 379 / 2e-129 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10038024 [exp] 378 / 2e-129 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 377 / 8e-129 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10024398 [exp] 365 / 1e-123 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10033301 [exp] 352 / 2e-119 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 349 / 5e-118 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 348 / 1e-117 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 346 / 9e-117 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 344 / 2e-114 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.012G142300.1 pacid=42782557 polypeptide=Potri.012G142300.1.p locus=Potri.012G142300 ID=Potri.012G142300.1.v4.1 annot-version=v4.1 ATGGAATTAGCAGTAGCCATGCTATTAATACTGCTGAATTTAGCATCGTGGTGCGTGCTTTCAGAGGGCCGGCTTCTTGTGGACATGACTCTGGTTTCCG ATGCTTCCAGCATTGGTGCCTTTTGCTTGGATGGAAGTTTGCCTGCGTATCATCTGCACAGAGGATTCGGAGCTGGTGCAAGCAACTGGCTTTTGCAATT TGAGGGAGGTGGGTGGTGCAATGATATACAATCATGCTTGGATCGAGCCAAAACGAAGCATGGATCTAGCCTTTACATGAACAAGTTGGAGGATTTCAAT GGAATCCTAAGCAACGATGCCTCACTTAATCCAGATTTTTATAATTGGAACCGTGTGAAGCTTAGATATTGTGATGGAGGTTCGTTTTCTGGAGATGCCA AATTTGACAATGGGACATCAGTCCTTTACTTCAGAGGACAAAAGATTTGGGAAGCAATGATTCTTGATCTCCTCCCCAAAGGTTTGGGGAATGCAGACAA GGCTTTGCTTTCAGGTTGCTCTGCTGGGGGTTTATCATCCTTTCTCCAATGCGAAAACTTTTACCGGGCATTACCGACGAATACCAGTGTGAAATGCTTG AGCGATGCTGGATTTTTTTTGGATGAAAGAGACATCACTCTGAACTACACCATGAGGACCTTCTTTGAAAACCTTGTTTCTCTACAGGGAATTGAAAAGA ATCTGGATAAAAACTGCACTAGTTTCCTTGACAATCCAAAACTGTGCATGTTTCCACAGTATTTCTTGAATTACATGACAACACCATTCTTCATCCTGAA CACAGCCTATGATGTATACCAATTCCATCATGCATTGGTTCCACCCTCTGCTGACATGAATGGAGACTGGAAGCGTTGCAAGCTTAGCATAGCATCATGT ACTCCACAGCAGCTTGACATACTGCAAGGCTTCAGGGGTGATATGCTGGCGGCATTGAGTTCATTTCTCAAGGATTCCACAAGCGGGGGAATGTTTATAA ATTCATGCTTTGCTCATTGCCAAAGTGAGACACAAGAAACATGGTTTGCACTTGGGTCCCCGAGTATCCAGGATAAGACTATTGCAGGAGCAGTTGGTGA TTGGTATTTTAGTAGAAATATAAGCAAGTTAATCGACTGTGCGTATCCTTGCGACGCTTCCTGCCATAACATCCTTGCACAGGTTTCCTAG
AA sequence Show only first row Show all	>Potri.012G142300.1 pacid=42782557 polypeptide=Potri.012G142300.1.p locus=Potri.012G142300 ID=Potri.012G142300.1.v4.1 annot-version=v4.1 MELAVAMLLILLNLASWCVLSEGRLLVDMTLVSDASSIGAFCLDGSLPAYHLHRGFGAGASNWLLQFEGGGWCNDIQSCLDRAKTKHGSSLYMNKLEDFN GILSNDASLNPDFYNWNRVKLRYCDGGSFSGDAKFDNGTSVLYFRGQKIWEAMILDLLPKGLGNADKALLSGCSAGGLSSFLQCENFYRALPTNTSVKCL SDAGFFLDERDITLNYTMRTFFENLVSLQGIEKNLDKNCTSFLDNPKLCMFPQYFLNYMTTPFFILNTAYDVYQFHHALVPPSADMNGDWKRCKLSIASC TPQQLDILQGFRGDMLAALSSFLKDSTSGGMFINSCFAHCQSETQETWFALGSPSIQDKTIAGAVGDWYFSRNISKLIDCAYPCDASCHNILAQVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	0	1
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	1.00	0.9131
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	3.00	0.8763
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	3.87	0.9011
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	4.47	0.9064
AT4G36945			PLC-like phosphodiesterases su...		Potri.005G139400 [exp]	5.00	0.8403
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	6.32	0.8769
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	6.92	0.8841
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	8.12	0.8689
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.012G109200 [exp]	8.24	0.8914
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	8.66	0.8859

Compare expression of checked genes

Potri.012G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.