Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23890 650 / 0 unknown protein AT5G52410 511 / 3e-172 unknown protein AT3G25680 161 / 2e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145700 [exp] 1350 / 0 AT5G23890 709 / 0.0 unknown protein Potri.010G131000 [exp] 173 / 2e-45 AT3G25680 502 / 2e-173 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038854 [exp] 773 / 0 AT5G52410 709 / 0.0 unknown protein Lus10014972 [exp] 753 / 0 AT5G23890 700 / 0.0 unknown protein Lus10035054 [exp] 167 / 2e-43 AT3G25680 472 / 2e-161 unknown protein Lus10021714 [exp] 165 / 3e-42 AT3G25680 456 / 1e-153 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G142500.7 pacid=42784022 polypeptide=Potri.012G142500.7.p locus=Potri.012G142500 ID=Potri.012G142500.7.v4.1 annot-version=v4.1 ATGGTATCAGCAATGGCTGCCACGTGTTCTCCGACCTCTCTCCAGCTTCGATTAGCCTTCAACTCCCATAACTGTAGACGATCACCTGCAACACTCACAC GGGCTTGTGTGAGGAAGAAGAAGAGTGATAGTAACCTTCGCTTTCTCTTGCTGTCTCAAAATGAACCGCGACGTAATGGGAGTTCGTGGGTCGTGTCGAG TTCGTGGACTGATTCGGATAATGGGAGTGATGAGTCTATTGAGAATCAGAGAAAGAAATGGTTTGGAGGCATGGTTGGAGCTGGAGTAGCTGGGGTCATC CTATTTGCGGGGCTTACCTTTGCAGCATTGTCTTTAAGCAAGCGGAGCACTTCCAGACCAAAACAAGAGATGGAACCATTCACAACTCAGCAGGAAGTTT CATTGGTCTCTGACAAGGAGGATGATAAAGTTGAGGAGAGTGAAAGCAAGGAAAGCAAGAAAGGTATAGAAACGGATCTTTCTTCATCTCCAGAACTTAA TGAAGCACCCAGTGAAAATAAACTTGGTGACAATAAGGAGACCTCTGTAGACAGTGTTGATTATGCTACTAGGGTCAGTGATACTGTTGATAATGAGCCT GTTCAAGAAAATTTGCAATATGAATCAAATTTTGATGACAAATCTGTTACTCCTGAAACAACAACCAGCTCAGAGAATTTGCCCAGTTCTGATATTAGTG CAAGTTCCTCTATATCAACCTTTGAAATAGAACAAAACCCTGTTAATGTAGAACCTAGCAATGTGCCAGATATAACAAATCTTAACACGGACCACCAGAG TGAATCGCCTGCCTCAAAGATAGATGAGAATTATGACTCATCGTTGAATTCTTCTAATTCCATCATTTGTGAACCCAGTGATCCTGTGGGTGTGAAAATT TCAGAGAGTTCACCCATGGATACAAGTTCAGAACCTCAAATTGTCCCCCAAGATGATATGGAGACTGTAGCCTCATTTTTAACCAAAGAAAATCTTGATC TGAGCAATACAACCCAGGATTCAGCTGAGAGAAATAGTTCCCTGGAAGTGAATCACTTAGATGAAAGAGATTCCTCAGAAACAATTTCCGAGTCAGCTTC AGTCGACCCATTTGCAAACACAGACGTCATTATTGCTAATAATGAGATGAAGGAAAGCAAACCATTTTTTGAACCACCAACTCCTGAAATTTCCTTCTCA GCTGGTATACCTGCTCCATCTGCAGTTTCTGCAGCCTTGCAGGTGCTTCCTGGAAAGGTTCTAGTTCCTGCAGTTGTTGATCAGGTTCAGGGGCAGGTAT TAGCTGCACTGCAAGTTTTGAAGGTTATTGAGGCGGATATTCAATCCAGTGATCTATGTACCCGGCGTGAATTTGCTCGTTGGTTAGTGACTGCTAGCAG TGCTCTTTCAAGGAGCACGGTGTCAAAAGTATATCCTGCAATGTACATAGAGAATTTTACTGAACTTGCATTTGATGATATCACGCCTGATGACCCTGAT TTTTCATCCATTCAAGGCTTAGCTGAAGCAGGACTTATCTCAAGCAAGCTTTCAAGTGGTGGTTTGCTTTCTTCTTCAGTTGAAAACCAAGGTCCATTTT ACTTTGCTGCTGAAAGCCCTTTGTCACGCCAGGATCTTGTCAGTTGGAAGATGGCCCTTGAGAAAAGACAATTTCCAGAAGCTGATAAAAAGATGCTGTA CAAAGTTTCTGGGTTCAGAGATATTGACAAGTTAAACCCGGATGCATGGCCTGCTCTTGTGGCTGACTTGTCTGCAGGAGATCAAGGAATTATATCACTT GCATTTGGTTGCACGAGATTGTTCCAGCCAGATAAACCTGTCACAAAGGCCCAAGCTGCTGTTGCTCTTGCAACTGGTGAGGCTTCTGACATAGTTAGTG AGGAGCTTGCACGTATTGAAGCAGAAGCTGTGGCAGAAAATGTCGTTTCTGCCCACAATGCTTTAGTAGCTCAAGTTGAACAGGATGTAAATGCAAGTTT TGAGAAGGAGCTTTCCATTGAGAGGGAAAAGATTAATGCTATAGAGAAAATGGCTGAAGAGGCAAGGTGCGAATTAGAAACATTAAGAGCTGAGAGAGAG AAGGATGATATTGCCTTGATGAAGGAGCGTGCTGCTATTGAATCTGAAATGGAAGTTCTTTCAAAGTTAAGGCGTGAATTGGAGGAGCAATTGCAAAGCC TTTTGAGCAACAAGGTGGAGATATCATATGAAAAGGAAAGGATTAGCAAACTTCAAAAAGAAGCAGAGAGTGAAAAGCAGGAGATCTCTAGATTACAGTA TGACCTAGAGGTTGAGCGGAAAGCCTTGTCAATGGCCAGGGCATGGGCTGAAGACGAGGCAAAAAGAGCAAGAGAGCAGGCAAAAGCCCTTGAAGAGGCT AGATATCGGTGGGAGAAGCATGGCATCAAGGTGGTGGTTGACAGTGATCTTAATGAAGAGAGTTCTACTGGAGTTACATGGCTGACTGCTGGAAAGCAAG TCTCTTCTGTTGAAGGAACTGTTAACAGGGCTGAGAACTTGGTGGACAGGCTCAAGCTAATGGCAGATGACATTAGAGGGAAATCTCGAGTAGTACTTGA TAAAATCATTCAGAAAATACTGGTCTTAATCTCAGTTCTGAAGGAGTGGATTGCAGAGGCATGTGCGAGGACCAAAGAACTTAAAGAAGCCACCATCTCA AAGACATGGGCATCAATACACGAGTTGCAGCAGAACACAACTGAATTTAGTTCTGCCATCAAGGAGAAGACGATAGGATCAATGCAAGAGTTGAAGCAGC ACACTGCAGAATTTGGTTCAGCTGTCAAGGAAGGCACAAAGCGGGTGACAGAAGATTGCAGGGAAGGAGTGGAGAAACTGACGCAGAAGTTCAAATCCTG A
AA sequence Show only first row Show all	>Potri.012G142500.7 pacid=42784022 polypeptide=Potri.012G142500.7.p locus=Potri.012G142500 ID=Potri.012G142500.7.v4.1 annot-version=v4.1 MVSAMAATCSPTSLQLRLAFNSHNCRRSPATLTRACVRKKKSDSNLRFLLLSQNEPRRNGSSWVVSSSWTDSDNGSDESIENQRKKWFGGMVGAGVAGVI LFAGLTFAALSLSKRSTSRPKQEMEPFTTQQEVSLVSDKEDDKVEESESKESKKGIETDLSSSPELNEAPSENKLGDNKETSVDSVDYATRVSDTVDNEP VQENLQYESNFDDKSVTPETTTSSENLPSSDISASSSISTFEIEQNPVNVEPSNVPDITNLNTDHQSESPASKIDENYDSSLNSSNSIICEPSDPVGVKI SESSPMDTSSEPQIVPQDDMETVASFLTKENLDLSNTTQDSAERNSSLEVNHLDERDSSETISESASVDPFANTDVIIANNEMKESKPFFEPPTPEISFS AGIPAPSAVSAALQVLPGKVLVPAVVDQVQGQVLAALQVLKVIEADIQSSDLCTRREFARWLVTASSALSRSTVSKVYPAMYIENFTELAFDDITPDDPD FSSIQGLAEAGLISSKLSSGGLLSSSVENQGPFYFAAESPLSRQDLVSWKMALEKRQFPEADKKMLYKVSGFRDIDKLNPDAWPALVADLSAGDQGIISL AFGCTRLFQPDKPVTKAQAAVALATGEASDIVSEELARIEAEAVAENVVSAHNALVAQVEQDVNASFEKELSIEREKINAIEKMAEEARCELETLRAERE KDDIALMKERAAIESEMEVLSKLRRELEEQLQSLLSNKVEISYEKERISKLQKEAESEKQEISRLQYDLEVERKALSMARAWAEDEAKRAREQAKALEEA RYRWEKHGIKVVVDSDLNEESSTGVTWLTAGKQVSSVEGTVNRAENLVDRLKLMADDIRGKSRVVLDKIIQKILVLISVLKEWIAEACARTKELKEATIS KTWASIHELQQNTTEFSSAIKEKTIGSMQELKQHTAEFGSAVKEGTKRVTEDCREGVEKLTQKFKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23890			unknown protein		Potri.012G142500 [exp]	0	1
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.008G177801 [exp]	5.65	0.6709
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.012G142200 [exp]	64.69	0.5635
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	67.94	0.5903
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	72.89	0.6193
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.005G204100 [exp]	76.81	0.5940
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Potri.006G095800 [exp]	100.87	0.5920	CAC3.1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	105.31	0.5682
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Potri.010G169600 [exp]	107.12	0.5784
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	116.44	0.5450
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	121.42	0.5584

Compare expression of checked genes

Potri.012G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.